Results 31 to 40 of about 1,576 (169)

Towards ETL Processes to OMOP CDM Using Metadata and Modularization

, 2023
OMOP common data model (CDM) is designed for analyzing large clinical data and building cohorts for medical research, which requires Extract-Transform-Load processes (ETL) of local heterogeneous medical data. We present a concept for developing and evaluating a modularized metadata-driven ETL process, which can transform data into OMOP CDM regardless ...
Yuan, Peng, Elisa, Henke, Martin, Sedlmayr, Franziska, Bathelt   +3 more
openaire   +2 more sources

Enabling data sharing and utilization for African population health data using OHDSI tools with an OMOP-common data model

Frontiers in Public Health, 2023
The COVID-19 pandemic has spurred the use of AI and DS innovations in data collection and aggregation. Extensive data on many aspects of the COVID-19 has been collected and used to optimize public health response to the pandemic and to manage the ...
Sylvia Kiwuwa-Muyingo, Jim Todd, Tathagata Bhattacharjee, Amelia Taylor, Jay Greenfield   +4 more
doaj   +1 more source

Towards the Representation of Genomic Data in HL7 FHIR and OMOP CDM [PDF]

, 2021
High throughput sequencing technologies have facilitated an outburst in biological knowledge over the past decades and thus enables improvements in personalized medicine. In order to support (international) medical research with the combination of genomic and clinical patient data, a standardization and harmonization of these data sources is highly ...
Yuan, Peng, Azadeh, Nassirian, Najia, Ahmadi, Martin, Sedlmayr, Franziska, Bathelt   +4 more
openaire   +2 more sources

Transforming electronic health record polysomnographic data into the Observational Medical Outcome Partnership's Common Data Model: a pilot feasibility study

Scientific Reports, 2021
Well-defined large-volume polysomnographic (PSG) data can identify subgroups and predict outcomes of obstructive sleep apnea (OSA). However, current PSG data are scattered across numerous sleep laboratories and have different formats in the electronic ...
Jeong-Whun Kim, Seok Kim, Borim Ryu, Wongeun Song, Ho-Young Lee, Sooyoung Yoo   +5 more
doaj   +1 more source

OP0285 TOWARDS IMPLEMENTING THE OMOP CDM ACROSS FIVE EUROPEAN BIOLOGIC REGISTRIES [PDF]

Annals of the Rheumatic Diseases, 2020
Background: The Observational and Medical Outcomes Partnerships (OMOP) common data model (CDM) provides a framework for standardising health data. Objectives: To map national biologic registry data collected from different European countries to the OMOP CDM. Methods: Five biologic registries are currently being mapped to the OMOP CDM: 1) the Czech
E. Burn, L. Kearsley-Fleet, K. Hyrich, M. Schaefer, D. Huschek, A. Strangfeld, J. Zavada, M. Lagová, D. Courvoisier, C. Tellenbach, K. Lauper, C. Sánchez-Piedra, N. Montero, J.T. Sanchez-Costa, D. Prieto-Alhambra   +14 more
openaire   +1 more source

Mapping Cancer Registry Data to the Episode Domain of the Observational Medical Outcomes Partnership Model (OMOP)

Applied Sciences, 2022
A great challenge in the use of standardized cancer registry data is deriving reliable, evidence-based results from large amounts of data. A solution could be its mapping to a common data model such as OMOP, which represents knowledge in a unified ...
Jasmin Carus, Sylvia Nürnberg, Frank Ückert, Catarina Schlüter, Stefan Bartels   +4 more
doaj   +1 more source

Transformation and Evaluation of the MIMIC Database in the OMOP Common Data Model: Development and Usability Study

JMIR Medical Informatics, 2021
BackgroundIn the era of big data, the intensive care unit (ICU) is likely to benefit from real-time computer analysis and modeling based on close patient monitoring and electronic health record data.
Nicolas Paris, Antoine Lamer, Adrien Parrot   +2 more
doaj   +1 more source

Converting HL7 CDA Based Nationwide Austrian Medication Data to OMOP CDM

, 2023
Austria’s national Electronic Health Record (EHR) system holds information on medication prescriptions and dispenses in highly structured HL7 Clinical Document Architecture (CDA) documents. Making these data accessible for research is desirable due to their volume and completeness.
Florian, Katsch, Rada, Hussein, Raffael, Korntheuer, Georg, Duftschmid   +3 more
openaire   +2 more sources

EHDEN - D2.3 - OMOP-CDM enhancements for outcome driven healthcare

, 2020
Introduction: EHDEN’s mission is to develop a federated research data network, standardized to OMOP Common Data Model (OMOP-CDM). Work Package 2 has the objective to enable the transition towards outcomes-driven healthcare systems in Europe. As part of this work, WP2 intends to extend the OMOP-CDM with the ICHOM standard sets. WP2 Deliverable 2.3 (D2.3)
Fox, Frank, Sandijk, Sebastiaan Van, Wissig, Stephanie   +2 more
openaire   +1 more source

Transforming Documents of the Austrian Nationwide EHR System into the OMOP CDM

, 2023
The Austrian nationwide EHR system ELGA can contribute valuable data for research due to its high volume of data and broad population coverage. In order to be applicable in international research projects, transformation to a standardized, research-oriented data model such as the OMOP common data model is essential.
Raffael Lukas, Korntheuer, Florian, Katsch, Georg, Duftschmid   +2 more
openaire   +2 more sources