Results 131 to 140 of about 1,490,571 (305)

Raman‐based label‐free microscopic analysis of the pancreas in living zebrafish larvae

FEBS Open Bio, EarlyView.
Forward stimulated Raman scattering (F‐SRS) and epi coherent anti‐Stokes Raman scattering (E‐CARS) allow label‐free discrimination of distinct subcellular structures in the pancreas of living zebrafish larvae. Given the straightforward applicability, we anticipate broad implementation of Raman microscopy in other organs and across various biomedical ...
Noura Faraj, Eline M. F. de Lange, Klaas A. Sjollema, Ben N. G. Giepmans   +3 more
wiley   +1 more source

Exploring the role of commercial stakeholders in open source software evolution

, 2012
Copyright @ 2012 SpringerIt has been lately established that a major success or failure factor of an OSS project is whether it involves a commercial company, or more extremely, when the project management is in the hands of a commercial software ...
Andrea Capiluppi, Stol, Klaas Jan, Mikkonen, T., Hammouda, I., Capiluppi, A, Boldyreff, C, Klaas-Jan Stol (12602296), Scacchi, W., Andrea Capiluppi (12616453), Klaas-Jan Stol, Stol, Klaas-Jan, Capiluppi, Andrea, Boldyreff, Cornelia, Capiluppi, Andrea; id_orcid, Cornelia Boldyreff, Stol, K, Lundell, B., Cornelia Boldyreff (12616456)   +17 more
core   +1 more source

Mycobacterial cell division arrest and smooth‐to‐rough envelope transition using CRISPRi‐mediated genetic repression systems

FEBS Open Bio, EarlyView.
CRISPRI‐mediated gene silencing and phenotypic exploration in nontuberculous mycobacteria. In this Research Protocol, we describe approaches to control, monitor, and quantitatively assess CRISPRI‐mediated gene silencing in M. smegmatis and M. abscessus model organisms.
Vanessa Point, Wafaa Achache, Janïs Laudouze, Eliana Sepulveda Ramos, Mickaël Maziero, Céline Crauste, Stéphane Canaan, Pierre Santucci   +7 more
wiley   +1 more source

Competition between open-source and proprietary software: the (La)TeX case study [PDF]

The paper examines competition between two development models, proprietary and open-source (``OS''). It first defines and compares those two models and then analyzes the influence the development of one type of software has on the development of the ...
Alexandre Gaudeul
core  

Polarization‐resolved femtosecond Vis/IR spectroscopy tailored for resolving weak signals in biological samples using minimal sample volume

FEBS Open Bio, EarlyView.
Unique biological samples, such as site‐specific mutant proteins, are available only in limited quantities. Here, we present a polarization‐resolved transient infrared spectroscopy setup with referencing to improve signal‐to‐noise tailored towards tracing small signals. We provide an overview of characterizing the excitation conditions for polarization‐
Clark Zahn, Karsten Heyne
wiley   +1 more source

C2α‐carbanion‐protonating glutamate discloses tradeoffs between substrate accommodation and reaction rate in actinobacterial 2‐hydroxyacyl‐CoA lyase

FEBS Open Bio, EarlyView.
Enzymes of the 2‐hydroxyacyl‐CoA lyase group catalyze the condensation of formyl‐CoA with aldehydes or ketones. Thus, by structural adaptation of active sites, practically any pharmaceutically and industrially important 2‐hydroxyacid could be biotechnologically synthesized. Combining crystal structure analysis, active site mutations and kinetic assays,
Michael Zahn, Barbara Seroka, Ryszard Lazny, Zenon Lotowski, Thore Rohwerder   +4 more
wiley   +1 more source

The need for open source software in machine learning

, 2007
Open source tools have recently reached a level of maturity which makes them suitable for building large-scale real-world systems. At the same time, the field of machine learning has developed a large body of powerful learning algorithms for diverse ...
Ratsch, Gunnar, Scholkopf, Bernhard, Vincent, P., LeCun, Y, Ong, C., Braun, M.L., Rasmussen, Carl Edward, Rasmussen, CE, Rätsch, G., Bengio, S., Müller, K.-R., Müller, KR, LeCunn, Yann, Muller, Klaus-Robert, Vincent , P., Pereira, Fernando, Vincent, Pascal, Bottou, Leon, Pereira, F, ,, Braun, ML, Ong, CS, Rasmussen, C.E., Smola, A, Sonnenburg, S., Holmes, G, Bengio, S, Weston, Jason, Williamson, RC, Sonnenburg, S, Williamson, Robert C., Bottou, L., Holmes, G., Ong, Cheng Soon, Pereira, F., Braun, M., Sonnenburg, Soren, Smola, Alexander, Williamson, R.C., Holmes , G., Schölkopf, B, Holmes, Geoffrey, Braun, Mikio L., Bengio, Samy, Schölkopf, B., Rasmussen, C., Williamson, R., Rätch, G, Weston, J, Smola, A., Ong, C.S., Müller, K., Bottou, L, Weston, J., Vincent, P, LeCun, Y.   +55 more
core  

A light‐triggered Time‐Resolved X‐ray Solution Scattering (TR‐XSS) workflow with application to protein conformational dynamics

FEBS Open Bio, EarlyView.
Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei, Fredrik Orädd, Konstantinos Magkakis, Magnus Andersson   +3 more
wiley   +1 more source

Applicability of mitotic figure counting by deep learning: a development and pan‐cancer validation study

FEBS Open Bio, EarlyView.
In this study, we developed a deep learning method for mitotic figure counting in H&E‐stained whole‐slide images and evaluated its prognostic impact in 13 external validation cohorts from seven different cancer types. Patients with more mitotic figures per mm2 had significantly worse patient outcome in all the studied cancer types except colorectal ...
Joakim Kalsnes, Maria X. Isaksen, Frida Julbø, Manohar Pradhan, Andreas Kleppe, Sepp De Raedt, Ole‐Johan Skrede, Turid Torheim, John Arne Nesheim, Hans Martin Mohn, Hanne A. Askautrud, Karolina Cyll, Wanja Kildal, Emma Rewcastle, Melinda Lillesand, Vebjørn Kvikstad, Emiel Janssen, Robert Jones, Odd Terje Brustugun, Bjørn Brennhovd, Erik Skaaheim Haug, Lill‐Tove Rasmussen Busund, Elin Richardsen, Sigve Andersen, Tom Dønnem, Kristina Lindemann, Gunnar Kristensen, Neil A. Shepherd, Marco Novelli, Knut Liestøl, David Kerr, Håvard E. Danielsen, Tarjei S. Hveem   +32 more
wiley   +1 more source

Towards an Expert Network in Open Standards and Open Source Software: Research, Expertise and Synergy for Open and Libres Standards and Software (RESOLL) - Version 2.0 [PDF]

CIRANO and its partners are proposing the creation of an Expert Network in Open Standards and Open Source Software (Research, Expertise and Synergy for Open and Libres Standards and Software-RESOLL), which would be a partnership between information ...
Adel El Zaïm, Robert Gérin-Lajoie
core