Results 61 to 70 of about 133,730 (253)

A light‐triggered Time‐Resolved X‐ray Solution Scattering (TR‐XSS) workflow with application to protein conformational dynamics

open access: yesFEBS Open Bio, EarlyView.
Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei   +3 more
wiley   +1 more source

Efficient flow equations for dissipative systems

open access: yesSciPost Physics, 2022
Open quantum systems provide an essential theoretical basis for the development of novel quantum technologies, since any real quantum system inevitably interacts with its environment. Lindblad master equations capture the effect of Markovian environments.
Gary Schmiedinghoff, Götz S. Uhrig
doaj   +1 more source

Analysing the significance of small conformational changes and low occupancy states in serial crystallographic data

open access: yesFEBS Open Bio, EarlyView.
This protocol paper outlines methods to establish the success of a time‐resolved serial crystallographic experiment, by means of statistical analysis of timepoint data in reciprocal space and models in real space. We show how to amplify the signal from excited states to visualise structural changes in successful experiments.
Jake Hill   +4 more
wiley   +1 more source

Refinement of amino‐acid conformation vs. difference density maps in time‐resolved serial femtosecond crystallography data analysis

open access: yesFEBS Open Bio, EarlyView.
The dFoCC pipeline starts with observed DED and resting‐state coordinates, which are then used to generate a library of triggered states. Correlation analysis of the calculated DED features of each candidate vs observed DED permits quantitative evaluation of candidate structural quality.
Meng Iao Fong   +3 more
wiley   +1 more source

Probing non-Markovian quantum dynamics with data-driven analysis: Beyond “black-box” machine-learning models

open access: yesPhysical Review Research, 2022
A precise understanding of the influence of a quantum system's environment on its dynamics, which is at the heart of the theory of open quantum systems, is crucial for further progress in the development of controllable large-scale quantum systems ...
I. A. Luchnikov   +5 more
doaj   +1 more source

Lectures on open quantum systems

open access: yesCanadian Journal of Physics
These notes are a short introduction to the mathematical theory of open quantum systems. They are meant to serve as an entry point into a broad research area that has applications across the quantum sciences dealing with systems subjected to external noise. The idea is to let the key structures of the theory emerge from a concrete model.
Marco Merkli, Ángel Neira
openaire   +2 more sources

Molecular characterization of covRS mutations in M1UK Streptococcus pyogenes

open access: yesFEBS Open Bio, EarlyView.
Group A Streptococcus (GAS) acquires covRS mutations driving a hypervirulent bacterial state, frequently associated with invasive disease‐like necrotizing fasciitis. We demonstrate that the newly emerged M1UK GAS lineage can also acquire these mutations.
Jarrad Pritchard   +12 more
wiley   +1 more source

Shortcut to Equilibration of an Open Quantum System

open access: yesPhysical Review Letters, 2019
We present a procedure to accelerate the relaxation of an open quantum system towards its equilibrium state. The control protocol, termed Shortcut to Equilibration, is obtained by reverse-engineering the non-adiabatic master equation. This is a non-unitary control task aimed at rapidly changing the entropy of the system.
Roie Dann   +2 more
openaire   +5 more sources

Effect of terahertz irradiation on DNA damage repair in living cells

open access: yesFEBS Open Bio, EarlyView.
We investigated the effect of terahertz (THz) wave irradiation on DNA double‐strand break (DSB) repair in living cells. We found that THz irradiation enhanced DSB repair at specific frequencies, whereas heat treatment inhibited it, indicating that this effect is nonthermal and frequency‐specific.
Yuya Ueno   +3 more
wiley   +1 more source

Experimental Optical Simulator of Reconfigurable and Complex Quantum Environment

open access: yesPRX Quantum, 2023
No quantum system can be considered totally isolated from its environment. In most cases the interaction between the system of interest and the external degrees of freedom deeply changes its dynamics, as described by open quantum system theory ...
P. Renault   +8 more
doaj   +1 more source

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