Results 121 to 130 of about 2,919 (208)

zDB: bacterial comparative genomics made easy

mSystems
The analysis and comparison of genomes rely on different tools for tasks such as annotation, orthology prediction, and phylogenetic inference. Most tools are specialized for a single task, and additional efforts are necessary to integrate and visualize the
Bastian Marquis, Trestan Pillonel, Alessia Carrara, Claire Bertelli   +3 more
doaj   +1 more source

Supplementary Table S4 for Expression Level Dominance and Homeolog Expression Bias in Recurrent Origins of the Allopolyploid Fern Polypodium hesperium

, 2019
Supplementary TABLE S4. Details of orthogroup membership for Polypodium transcripts corresponding to the Plant Tribes gene family ...
Erin Sigel (5714291), Michael Windham (4917883), Kathleen Pryer (6858443), Joshua Der (6294578)   +3 more
core   +1 more source

protein-sequence alignments

, 2014
Peptide alignments for orthogroup clusters in the project, calculated using MUSCLE.
Jeff J. Doyle (245695), Peng, Yanhui, Dash, Sudhansu, Stewart Jr., Charles N., Sudhansu Dash (3248244), Blake Joyce (3248247), Charles N. Stewart Jr. (3248241), Yanhui Peng (3248250), Cui Chen (412529), Deyholos, Michael K., Nelson, Matthew N., Joyce, Blake, Doyle, Jeff J., Steven B. Cannon (245683), Tan, Xuemei, Harkess, Alex, Chen, Cui, Carpenter, Eric, Kutchan, Toni, Xuemei Tan (723836), Leebens-Mack, Jim, Toni Kutchan (3248238), Jim Leebens-Mack (13932), Eric Carpenter (403407), Matthew N. Nelson (604309), Alex Harkess (3198564), Megan Rolf (117303), Wong, Gane Ka-Shu, Yong Zhang (5893), Rolf, Megan, McKain, Michael R., Cannon, Steven B., Michael R. McKain (3198540), Michael K. Deyholos (117341), Gane Ka-Shu Wong (5903), Zhang, Yong   +35 more
core   +1 more source

Visualizing genomic evolution in Caenorhabditis through WormSynteny

BMC Genomics
Understanding the syntenic relationships among genomes is crucial to elucidate the genomic mechanisms that drive the evolution of species. The nematode Caenorhabditis is a good model for studying genomic evolution due to the well-established biology of ...
Lilly Bouvarel, Dongyao Liu, Chaogu Zheng   +2 more
doaj   +1 more source

both_pops_count_matrix_orthogroups

, 2018
the count matrix at the orthogroup level for both the northern and southern ...
Morgan Kelly (3283722), Melissa DeBiasse (5012981), Kawji, Yasmeen, Kelly, Morgan, Yasmeen Kawji (5012987), DeBiasse, Melissa   +5 more
core   +1 more source

The identification of small molecule inhibitors with anthelmintic activities that target conserved proteins among ruminant gastrointestinal nematodes

mBio
Gastrointestinal nematode (GIN) infections are a major concern for the ruminant industry worldwide and result in significant production losses. Naturally occurring polyparasitism and increasing drug resistance that potentiate disease outcomes are ...
Hyeim Jung, Dante Zarlenga, John C. Martin, Peter Geldhof, Kymberlie Hallsworth-Pepin, Makedonka Mitreva   +5 more
doaj   +1 more source

Zea_mays.OrthoFinder.by.orthogroup.csv

, 2018
Orthologous and paralogous groups identified by OrthoFinder listed by OrthoGroup ...
Buell, C. Robin, Brieanne Vaillancourt (108028), Esteban, Eddi, Pasha, Asher, Vaillancourt, Brieanne, Asher Pasha (3637951), Nicholas J. Provart (8028191), Genevieve M. Hoopes (5014733), C. Robin Buell (7892507), John P. Hamilton (7892504), Joshua C. Wood (7060799), Eddi Esteban (7060802), Hamilton, John P., Provart, Nicholas J., Wood, Joshua C., Hoopes, Genevieve M.   +15 more
core   +1 more source

Search for and functional annotation of multi-domain PLA2 family proteins in flatworms

Вавиловский журнал генетики и селекции
The phospholipase A2 (PLA2) is a superfamily of hydrolases that catalyze the hydrolysis of phospholipids and play a key role in many molecular processes in the cells and the organism as a whole.
M. E. Bocharnikova, I. I. Turnaev, D. A. Afonnikov   +2 more
doaj   +1 more source

Assessment of olfactory receptor gene evolution in baleen whales

<p>Olfactory receptor genes were mined from whales and terrestrial outgroup species. Dataset includes whale and outgroup OR nucleotide fasta files, as well as a table containing orthogroup trees in newick format and orthogroup tree images.</p ...
Jauhal, April
core   +1 more source

full_count_matrix_orthogroups

, 2018
The count matrix at the orthogroup level for orthogroups present in both ...
Morgan Kelly (3283722), Melissa DeBiasse (5012981), Yasmeen Kawji (5012987)   +2 more
core   +1 more source