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List of Pyricularia (syn. Magnaporthe) oryzae entries in the 94 MAX effector orthogroup (OG) clusters.

List of Pyricularia (syn. Magnaporthe) oryzae entries in the 94 MAX effector orthogroup (OG) clusters.
Mounia Lahfa (18510342) +12 more
core +1 more source

Additional file 15: of Genome-wide identification of MST, SUT and SWEET family sugar transporters in root parasitic angiosperms and analysis of their expression during host parasitism

, 2019
The species to which orthogroups are most frequently associated. Note the differences between the raw number of members in a certain orthogroup versus the percentage of sequences from a species that are members of that orthogroup.
Yu Wang (12152) +4 more
core +1 more source

Host and venom evolution in parasitoid wasps: does independently adapting to the same host shape the evolution of the venom gland transcriptome?

BMC Biology
Background Venoms have repeatedly evolved over 100 occasions throughout the animal tree of life, making them excellent systems for exploring convergent evolutionary novelty.
Yi Yang +7 more
doaj +1 more source

Legume genome structures and histories inferred from Cercis canadensis and Chamaecrista fasciculata genomes

The Plant Journal, Volume 126, Issue 5, June 2026.
SUMMARY The legume family originated ca. 60–65 million years ago and soon diversified into at least six lineages (now extant subfamilies). The signal of whole genome duplications (WGD) is apparent in species sampled from all six subfamilies. The early diversification has posed difficulties for resolving the legume backbone structure and the timing of ...
Hyun‐oh Lee +24 more
wiley +1 more source

Table S6

, 2019
Orthogroup (protein cluster) analysis based on all 13 genomes from Loki- and Thorarchaeota. Functional annotation for each of the orthogroups was predicted based on the majority rule of the proteins within each orthogroup.
Lokeshwaran Manoharan (4165459)
core +1 more source

Genomic hotspots: localized chromosome gene expansions identify lineage-specific innovations as targets for functional biodiversity and predictions of stress resilience

Frontiers in Marine Science
Functional and biodiversity genomics is essential for assessment and monitoring of planetary health and species-specific management in changing ecosystems. However, experimental knowledge of gene functions is limited to a few species, and dependencies on
Eric Edsinger, Leonid L. Moroz, Leonid L. Moroz +2 more
doaj +1 more source

mycOG - Scalable phylogenetic orthology inference (OrthoFinder + Mycotools)

, 2021
mycOG integrates Orthofinder with bigmcl and Mycotools to enable large-scale fungal orthogroup ...
Zachary Konkel
core +1 more source

Functional annotations of Phytophthora cactorum RxLR candidates.

, 2018
Orthogroup assignment shows conservation of these genes throughout Phytophthora spp. Numbers of genes in each orthogroup are shown for P. cactorum (Pcac), P. parasitica (Ppar), P. infestans (Pinf), P. capsici (Pcap) and P. sojae (Psoj).
Laura A. Lewis (5811185) +6 more
core +1 more source

Expansion and Evolutionary Patterns of Glycosyltransferase Family 8 in Gramineae Crop Genomes and Their Expression under Salt and Cold Stresses in Oryza sativa ssp. japonica

Biomolecules, 2019
Plant cell walls play a fundamental role in several ways, providing structural support for cells, resistance against pathogens and facilitating the communication between cells.
Weilong Kong +9 more
doaj +1 more source

Phytophthora cactorum genes in orthogroups shared with characterized P. infestans RxLR candidates.

, 2018
Orthogroup assignment shows conservation of these genes throughout Phytophthora spp. Numbers of genes in each orthogroup are shown for P. cactorum (Pcac), P. parasitica (Ppar), P. infestans (Pinf), P. capsici (Pcap) and P. sojae (Psoj).
Laura A. Lewis (5811185) +6 more
core +1 more source

comparative genomics
medicine
biology general

genome assembly
synteny
genome annotation