Results 81 to 90 of about 4,265 (160)

LINGUINE: a phylogeny-aware, orthogroup-based framework for robust ancestral linkage group inference

Abstract Reconstructing the chromosomal architecture of ancestral genomes is a central challenge in comparative genomics, yet existing methods for ancestral linkage group (ALG) inference struggle in clades with rapid genome evolution.
Carlos Vargas-Chávez, Rosa Fernández
openaire   +1 more source

Evolution of the TCP gene family and pan-genome analysis in tea (Camellia sinensis)

BMC Plant Biology
TCP transcription factors are key regulators of plant architecture and development, yet their evolution is often inferred from a single reference genome.
Jicheng Sun, Quanlong Liu, Yixin Cao, Yafei Wang, Yue Wang, Guang Chen   +5 more
doaj   +1 more source

In-silico analysis of Bifidobacterium bifidum strain 900791 genome in the context of the B. bifidum pangenome

Frontiers in Cellular and Infection Microbiology
IntroductionBifidobacterium bifidum is a key member of the human gut microbiota with well-recognised roles in intestinal homeostasis, glycan metabolism, and immunomodulation.
Juan P. Cárdenas, Juan P. Cárdenas, Boris Vidal-Veuthey, Boris Vidal-Veuthey, Kevin Meza, Daniel E. Almonacid, Daniel E. Almonacid, Anastasia Gutkevich   +7 more
doaj   +1 more source

Cyanobacterial metagenomes reflect the spatiotemporal variations in a coastal brackish lagoon

Environmental Advances
Cyanobacteria play vital roles in aquatic ecosystems by driving photosynthesis, nitrogen fixation, carbon sequestration, and forming symbiotic relationships with diverse organisms.
Manisha Ray, Govindhaswamy Umapathy
doaj   +1 more source

Comparative genomics of Plasmodium yoelii nigeriensis N67 and N67C: genome-wide polymorphisms, differential gene expression, and drug resistance

BMC Genomics
Background The study of rodent malaria parasites has significantly advanced our understanding of malaria parasite biology and host responses to parasite infections.
Jian Wu, Cihan Oguz, Awet Alem Teklemichael, Fangzheng Xu, Rachel V Stadler, Amuza Byaruhanga Lucky, Shengfa Liu, Osamu Kaneko, Justin Lack, Xin-zhuan Su   +9 more
doaj   +1 more source

The genome of Doleromyrma darwiniana and annotations for five additional Dolichoderinae species

Scientific Data
Darwin’s ant, Doleromyrma darwiniana, is a native ant to Australia that has established invasive populations in nearby Aotearoa, New Zealand. Darwin’s ant belongs to the Dolichoderinae subfamily of the Formicidae family, which contains species with a ...
Phoebe Keddell, Joseph Guhlin, Peter K. Dearden   +2 more
doaj   +1 more source

Sequencing, annotation and analysis of the genome of <i>Oxycarenus hyalinipennis</i>, the cotton seed bug. [PDF]

Life Sci Alliance
Heraghty SD, Sim SB, Geib SM, Corpuz RL, Hoddle CD, Hoddle MS, Brent CS, Gundersen-Rindal DE, Sparks ME.   +8 more
europepmc   +1 more source

Comparative genomics of microalgae: molecular mechanisms underlying efficient CO₂ assimilation. [PDF]

BMC Genomics
Di Martino J, Liberati F, Carrus M, Arcieri M, Arcioni L, Bottoni P, Cafaro C, De Giorgi L, Fardelli A, Franchini P, Canestrelli D, Castrignanò T.   +11 more
europepmc   +1 more source

A multiplant transcriptomic atlas reveals conserved and lineage-specific defense architectures in response to <i>Botrytis cinerea</i>. [PDF]

Proc Natl Acad Sci U S A
Singh R, Muhich AJ, Tom C, Caseys C, Kliebenstein DJ.   +4 more
europepmc   +1 more source

Phylogenomics and gene association analysis support probiotic potential in a subset of <i>Staphylococcus xylosus</i> isolates. [PDF]

Microb Genom
Rich KD, Cai Z, Nobrega DB, Ronholm J, De Buck J.   +4 more
europepmc   +1 more source