Palindromic Sequence-Targeted (PST) PCR, Version 2: An Advanced Method for High-Throughput Targeted Gene Characterization and Transposon Display [PDF]
Frontiers in Plant Science, 2021 Genome walking (GW), a strategy for capturing previously unsequenced DNA fragments that are in proximity to a known sequence tag, is currently predominantly based on PCR.
Ruslan Kalendar +4 more
doaj +4 more sources
Palindromic sequence impedes sequencing-by-ligation mechanism. [PDF]
BMC Syst Biol, 2012 Abstract Background Current next-generation sequencing (NGS) platforms adopt two types of sequencing mechanisms: by synthesis or by ligation. The former is employed by 454 and Solexa systems, while the latter by SOLiD system.
Huang YF +4 more
europepmc +7 more sources
Comprehensive analysis of repetitive extragenic palindrome sequences identified in bacteria and archaea using a new web-based tool, RepRanger [PDF]
mSphereRepetitive extragenic palindromic (REP) sequences were first discovered in the intergenic regions of Escherichia coli and later found in phylogenetically distinct bacterial species. However, their biological roles and sequence conservation remain unclear.
Oleg N. Murashko +7 more
doaj +3 more sources
Bacterial repetitive extragenic palindromic sequences are DNA targets for Insertion Sequence elements [PDF]
BMC Genomics, 2006 Background Mobile elements are involved in genomic rearrangements and virulence acquisition, and hence, are important elements in bacterial genome evolution.
Pareja Eduardo, Tobes Raquel
doaj +6 more sources
Efficient and specific internal cleavage of a retroviral palindromic DNA sequence by tetrameric HIV-1 integrase. [PDF]
PLoS ONE, 2007 BACKGROUND: HIV-1 integrase (IN) catalyses the retroviral integration process, removing two nucleotides from each long terminal repeat and inserting the processed viral DNA into the target DNA.
Olivier Delelis +7 more
doaj +3 more sources
Palindromic sequence artifacts generated during next generation sequencing library preparation from historic and ancient DNA. [PDF]
PLoS ONE, 2014 Degradation-specific processes and variation in laboratory protocols can bias the DNA sequence composition from samples of ancient or historic origin.
Bastiaan Star +9 more
doaj +2 more sources
A giant family of short palindromic sequences in Stenotrophomonas maltophilia [PDF]
FEMS Microbiology Letters, 2010 The genome of Stenotrophomonas maltophilia is peppered with palindromic elements called SMAG (Stenotrophomonas maltophilia GTAG) because they carry at one terminus the tetranucleotide GTAG. The repeats are species-specific variants of the superfamily of repetitive extragenic palindromes (REPs), DNA sequences spread in the intergenic space in many ...
ROCCO, FRANCESCO +2 more
openaire +5 more sources
The asymptotic repetition threshold of sequences rich in palindromes [PDF]
European Journal of CombinatoricsThe asymptotic critical exponent measures for a sequence the maximum repetition rate of factors of growing length. The infimum of asymptotic critical exponents of sequences of a certain class is called the asymptotic repetition threshold of that class.
Dvořáková, Lubomíra +2 more
openaire +3 more sources
Correction: Palindromic Sequence Artifacts Generated during Next Generation Sequencing Library Preparation from Historic and Ancient DNA. [PDF]
PLoS ONE, 2014 doaj +4 more sources
Genomic insights into ceftazidime resistance in <i>Burkholderia pseudomallei</i>: discovery of A172T mutation and palindromic GC-rich repeat sequences facilitating <i>penA</i> duplication and amplification. [PDF]
Antimicrob Agents ChemotherTuanyok A +13 more
europepmc +2 more sources