Results 1 to 10 of about 965,609 (309)
DNA deformability in sequence-dependent capture of E. coli gyrase [PDF]
Nature CommunicationsTo understand how gyrase interacts with DNA and selects a site of action, we created an ad hoc shape-based recognition methodology to ascertain the DNA sequence from cryoEM density maps as a string of purines and pyrimidines, which matched to the DNA ...
Matthew L. Baker +9 more
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Base Sequence Context Effects on Nucleotide Excision Repair [PDF]
Journal of Nucleic Acids, 2010 Nucleotide excision repair (NER) plays a critical role in maintaining the integrity of the genome when damaged by bulky DNA lesions, since inefficient repair can cause mutations and human diseases notably cancer. The structural properties of DNA lesions
Yuqin Cai +3 more
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Discovery of a tRNA-like base sequence in the coronavirus genome and possible mechanism of action [PDF]
Genes and Genomics, 2022 Hachiro Inokuchi, Inokuchi Hachiro
exaly +2 more sources
On base and Turyn sequences [PDF]
Mathematics of Computation, 1990 Base sequences of lengths n + 1 n + 1
Koukouvinos, C. +2 more
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Hierarchical Phrase-Based Sequence-to-Sequence Learning
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing, 2022 We describe a neural transducer that maintains the flexibility of standard sequence-to-sequence (seq2seq) models while incorporating hierarchical phrases as a source of inductive bias during training and as explicit constraints during inference. Our approach trains two models: a discriminative parser based on a bracketing transduction grammar whose ...
Bailin Wang +3 more
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Feature-Based Sequence-to-Sequence Matching [PDF]
International Journal of Computer Vision, 2006 This paper studies the problem of matching two unsynchronized video sequences of the same dynamic scene, recorded by different stationary uncalibrated video cameras. The matching is done both in time and in space, where the spatial matching can be modeled by a homography (for 2D scenarios) or by a fundamental matrix (for 3D scenarios).
Yaron Caspi, Denis Simakov, Michal Irani
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TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data [PDF]
Genomics & Informatics, 2017 High-throughput transcriptome sequencing, also known as RNA sequencing (RNA-Seq), is a standard technology for measuring gene expression with unprecedented accuracy.
Jae Hyun Lim, Soo Youn Lee, Ju Han Kim
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Reservoir prediction of shallow braided delta front by Comprehensive Prediction Error Filtering Analysis [PDF]
E3S Web of Conferences, 2021 For a more accurate reservoir prediction of braided delta front, the method of High Resolution Sequence Stratigraphy was adopted in Moxizhuang Oil Field with the assistance of Comprehensive Prediction Error Filter Analysis.
Li Wenjuan
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A Comparison of a Transition-based and a Sequence-based Analysis of AOI Transition Sequences [PDF]
ACM Symposium on Eye Tracking Research and Applications, 2020 Several visual analytics (VA) systems are used for analyzing eye-tracking data because they synergize human-in-the-loop exploration with speed and accuracy of the computer. In the VA systems, the choices of visualization techniques could afford discovering certain types of insights while hindering others.
Chia-Kai Yang +2 more
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Sequence dependence of transient Hoogsteen base pairing in DNA.
PLoS Computational Biology, 2022 Hoogsteen (HG) base pairing is characterized by a 180° rotation of the purine base with respect to the Watson-Crick-Franklin (WCF) motif. Recently, it has been found that both conformations coexist in a dynamical equilibrium and that several biological ...
Alberto Pérez de Alba Ortíz +2 more
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