Results 11 to 20 of about 6,213,636 (307)
Decoupling of Bypass Efficiency and Mutagenicity of the 2-Acetylaminofluorene C8-Guanine Adduct by DNA Sequence Context [PDF]
ToxicsDNA sequence context plays a critical role in modulating the mutational effects of DNA damage. Here, we investigated how base identity influences the replication bypass and mutagenicity of a site-specific dG-AAF (2-acetylaminofluorene) bulky adduct in ...
Yi-Tzai Chen +5 more
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DNA deformability in sequence-dependent capture of E. coli gyrase [PDF]
Nature CommunicationsTo understand how gyrase interacts with DNA and selects a site of action, we created an ad hoc shape-based recognition methodology to ascertain the DNA sequence from cryoEM density maps as a string of purines and pyrimidines, which matched to the DNA ...
Matthew L. Baker +9 more
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On base and Turyn sequences [PDF]
Mathematics of Computation, 1990 Base sequences of lengths n + 1 n + 1
Koukouvinos, C. +2 more
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Hierarchical Phrase-Based Sequence-to-Sequence Learning
Proceedings of the 2022 Conference on Empirical Methods in Natural Language Processing, 2022 We describe a neural transducer that maintains the flexibility of standard sequence-to-sequence (seq2seq) models while incorporating hierarchical phrases as a source of inductive bias during training and as explicit constraints during inference. Our approach trains two models: a discriminative parser based on a bracketing transduction grammar whose ...
Bailin Wang +3 more
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Feature-Based Sequence-to-Sequence Matching [PDF]
International Journal of Computer Vision, 2006 This paper studies the problem of matching two unsynchronized video sequences of the same dynamic scene, recorded by different stationary uncalibrated video cameras. The matching is done both in time and in space, where the spatial matching can be modeled by a homography (for 2D scenarios) or by a fundamental matrix (for 3D scenarios).
Yaron Caspi, Denis Simakov, Michal Irani
openaire +1 more source
TRAPR: R Package for Statistical Analysis and Visualization of RNA-Seq Data [PDF]
Genomics & Informatics, 2017 High-throughput transcriptome sequencing, also known as RNA sequencing (RNA-Seq), is a standard technology for measuring gene expression with unprecedented accuracy.
Jae Hyun Lim, Soo Youn Lee, Ju Han Kim
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Reservoir prediction of shallow braided delta front by Comprehensive Prediction Error Filtering Analysis [PDF]
E3S Web of Conferences, 2021 For a more accurate reservoir prediction of braided delta front, the method of High Resolution Sequence Stratigraphy was adopted in Moxizhuang Oil Field with the assistance of Comprehensive Prediction Error Filter Analysis.
Li Wenjuan
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Evaluation of nucleosome forming potentials (NFPs) of forensically important STRs [PDF]
, 2011 Degraded forensic samples have proved difficult to analyze and interpret. New analysis techniques are constantly being discovered and improved but researchers have overlooked the structural properties that could prevent or slow the process of degradation.
Thanakiatkrai, Phuvadol, Welch, Lindsey
core +4 more sources
Sequence dependence of transient Hoogsteen base pairing in DNA.
PLoS Computational Biology, 2022 Hoogsteen (HG) base pairing is characterized by a 180° rotation of the purine base with respect to the Watson-Crick-Franklin (WCF) motif. Recently, it has been found that both conformations coexist in a dynamical equilibrium and that several biological ...
Alberto Pérez de Alba Ortíz +2 more
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IEEE Access, 2021 Mobile manipulators are able to operate in a large workspace, and have the potential to replace human workers to perform a sequence of pick-and-place tasks at separate locations. Many existing works optimize the base position or manipulator configuration
Jingren Xu +4 more
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