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Transposable elements and the plant pan-genomes
Current Opinion in Plant Biology, 2007The comparative sequencing of several grass genomes has revealed that transposable elements are largely responsible for extensive variation in both intergenic and local genic content, not only between closely related species but also among individuals within a species.
MORGANTE, Michele +2 more
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Sequencing the species pan-genome
Nature Reviews Microbiology, 2009This month's Genome Watch discusses the recent advances in sequencing technology that have allowed microbiologists to determine the genome sequences not just of individual species but also of entire genera and have allowed a view of the entire pan-bacterial genome.
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2019
The notion of pan-genome or genome graph, understood as the representation of all variant genomes of one or more closely related species, is gaining attractiveness to replace the classical, sequence-based, linear reference genome. Indeed, one of main reasons why most analyses are based on the linear reference genome is simplicity: simplicity of ...
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The notion of pan-genome or genome graph, understood as the representation of all variant genomes of one or more closely related species, is gaining attractiveness to replace the classical, sequence-based, linear reference genome. Indeed, one of main reasons why most analyses are based on the linear reference genome is simplicity: simplicity of ...
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lettuce pan genome construction
This project includes 12 lettuce assembly genomes, then constructs a graph-based pan genome.openaire +1 more source
The Danish reference pan genome
2014Sequencing of Danish parent-offspring trios to determine genomic variation within the Danish population. First release comprises of ten trios sequenced to 50X using libraries of insert sizes from 180nt to 800nt.
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The Bacterial Pan-Genome and Reverse Vaccinology
2009The whole genome sequence of most human bacterial pathogens is available and the advent of next-generation sequencing technologies will result in a large number of sequenced isolates per pathogenic species. The study of multiple genome sequences of a given bacterium provides insights into its evolution, pathogenic potential and diversity.
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Genomics, Pan-Genomics, and Super Pan-Genomics of Major Oilseed Crops
Yogesh Dashrath Naik +14 moreopenaire +1 more source