Results 21 to 30 of about 26,166,385 (205)

Structure-Based Pharmacophore Modeling, Virtual Screening, Molecular Docking, ADMET, and Molecular Dynamics (MD) Simulation of Potential Inhibitors of PD-L1 from the Library of Marine Natural Products

open access: yesMarine Drugs, 2021
Background: In the past decade, several antibodies directed against the PD-1/PD-L1 interaction have been approved. However, therapeutic antibodies also exhibit some shortcomings. Using small molecules to regulate the PD-1/PD-L1 pathway may be another way
Lianxiang Luo   +3 more
doaj   +1 more source

Discovery of YopE Inhibitors by Pharmacophore-Based Virtual Screening and Docking [PDF]

open access: yesISRN Bioinformatics, 2013
Gram-negative bacteria Yersinia secrete virulence factors that invade eukaryotic cells via type III secretion system. One particular virulence member, Yersinia outer protein E (YopE), targets Rho family of small GTPases by mimicking regulator GAP protein activity, and its secretion mainly induces cytoskeletal disruption and depolymerization of actin ...
Gizem Ozbuyukkaya   +2 more
openaire   +2 more sources

Computer-aided drug design for virtual-screening and active-predicting of main protease (Mpro) inhibitors against SARS-CoV-2

open access: yesFrontiers in Pharmacology, 2023
Introduction: SARS-CoV-2 is a novel coronavirus with highly contagious and has posed a significant threat to global public health. The main protease (Mpro) is a promising target for antiviral drugs against SARS-CoV-2.Methods: In this study, we have used ...
Renhui Dai, Hongwei Gao, Ruiling Su
doaj   +1 more source

Identification of 3-((1-(Benzyl(2-hydroxy-2-phenylethyl)amino)-1-oxo-3-phenylpropan-2-yl)carbamoyl)pyrazine-2-carboxylic Acid as a Potential Inhibitor of Non-Nucleosidase Reverse Transcriptase Inhibitors through InSilico Ligand- and Structure-Based Approaches

open access: yesMolecules, 2021
Non-nucleosidase reverse transcriptase inhibitors (NNRTIs) are highly promising agents for use in highly effective antiretroviral therapy. We implemented a rational approach for the identification of promising NNRTIs based on the validated ligand- and ...
Deepti Mathpal   +10 more
doaj   +1 more source

A combination of receptor-based pharmacophore modeling & QM techniques for identification of human chymase inhibitors. [PDF]

open access: yesPLoS ONE, 2013
Inhibition of chymase is likely to divulge therapeutic ways for the treatment of cardiovascular diseases, and fibrotic disorders. To find novel and potent chymase inhibitors and to provide a new idea for drug design, we used both ligand-based and ...
Mahreen Arooj   +4 more
doaj   +1 more source

Pharmacophore-based Virtual Screening: Identification of Selective Sirtuin 2 Inhibitors

open access: yesJournal of Research in Pharmacy, 2023
ABSTRACT: The Class III histone deacetylases protein Sirt2 has been implicated in the pathogenesis of several agerelated diseases such as inflammation, cancer, and type II diabetes and is considered an attractive novel therapeutic target. High-quality small-molecule inhibitors of Sirt2 are vital as chemical probes for target validation and potential ...
Karaman Mayack, Berin   +1 more
openaire   +3 more sources

On the Integration of Pharmacophore Model and Molecular Docking Method

open access: yesJournal of Algorithms & Computational Technology, 2011
Structure-based molecular docking has been recognized as the most effective virtual screening technology. Two aspects decide the accuracy of virtual screening result: one is the simulation degree to the interaction of ligands and acceptors, the other is ...
G. Dong, X.J. Deng, J.H. Xiao
doaj   +1 more source

Pharmacophore modeling and virtual screening for the discovery of new fatty acid amide hydrolase inhibitors

open access: yesActa Pharmaceutica Sinica B, 2011
A predictive pharmacophore model has been generated from a series of diverse fatty acid amide hydrolase (FAAH) inhibitors and the optimal pharmacophore model applied in virtual screening.
Dong-sheng Zhao   +4 more
doaj   +1 more source

Discovery of Potential Chemical Probe as Inhibitors of CXCL12 Using Ligand-Based Virtual Screening and Molecular Dynamic Simulation

open access: yesMolecules, 2020
CXCL12 are small pro-inflammatory chemo-attractant cytokines that bind to a specific receptor CXCR4 with a role in angiogenesis, tumor progression, metastasis, and cell survival. Globally, cancer metastasis is a major cause of morbidity and mortality. In
Sajjad Haider   +2 more
doaj   +1 more source

Pharmacophore-based virtual screening versus docking-based virtual screening: a benchmark comparison against eight targets [PDF]

open access: yesActa Pharmacologica Sinica, 2009
This study was conducted to compare the efficiencies of two virtual screening approaches, pharmacophore-based virtual screening (PBVS) and docking-based virtual screening (DBVS) methods.All virtual screens were performed on two data sets of small molecules with both actives and decoys against eight structurally diverse protein targets, namely ...
Zhi, Chen   +7 more
openaire   +2 more sources

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