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PHAST: A Fast Phage Search Tool [PDF]

open access: yesNucleic Acids Research, 2011
PHAge Search Tool (PHAST) is a web server designed to rapidly and accurately identify, annotate and graphically display prophage sequences within bacterial genomes or plasmids. It accepts either raw DNA sequence data or partially annotated GenBank formatted data and rapidly performs a number of database comparisons as well as phage 'cornerstone ...
Jonathan Dennis   +2 more
exaly   +3 more sources

PHASTER: a better, faster version of the PHAST phage search tool [PDF]

open access: yesNucleic Acids Research, 2016
PHASTER (PHAge Search Tool - Enhanced Release) is a significant upgrade to the popular PHAST web server for the rapid identification and annotation of prophage sequences within bacterial genomes and plasmids. Although the steps in the phage identification pipeline in PHASTER remain largely the same as in the original PHAST, numerous software ...
David S Wishart   +2 more
exaly   +3 more sources

PHAST: Hardware-accelerated shortest path trees

Journal of Parallel and Distributed Computing, 2011
We present a novel algorithm to solve the nonnegative single-source shortest path problem on road networks and other graphs with low highway dimension. After a quick preprocessing phase, we can compute all distances from a given source in the graph with essentially a linear sweep over all vertices.
Daniel Delling   +3 more
openaire   +1 more source

PhaST: Model-free Phaseless Subspace Tracking

ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 2019
Phaseless subspace tracking is the problem of recovering a time sequence of discrete signals from magnitude-only measurements of their linear projections, when the true signal lies in a low-dimensional subspace that can change with time. A typical assumption used in a lot of work is that the subspace changes gradually over time.
Seyedehsara Nayer, Namrata Vaswani
openaire   +1 more source

Performance portability in a real world application: PHAST applied to Caffe

The International Journal of High Performance Computing Applications, 2022
This work covers the PHAST Library’s employment, a hardware-agnostic programming library, to a real-world application like the Caffe framework. The original implementation of Caffe consists of two different versions of the source code: one to run on CPU platforms and another one to run on the GPU side. With PHAST, we aim to develop a single-source code
Pablo Antonio Martínez   +4 more
openaire   +3 more sources

PHAST: plano holographic aspheric stitching technique

Advances in Optical and Mechanical Technologies for Telescopes and Instrumentation III, 2018
Telescope design advancements are leading to the need for larger convex secondary elements, making the use of traditional refractive test geometries impractical. In response to requests for larger convex components, Harris has developed the Plano Holographic Aspheric Stitching Technique (PHAST)[1], a novel metrology approach that offers versatility as ...
Malcolm N. O'Sullivan   +2 more
openaire   +1 more source

Application of Phast in the Quantitative Consequence Analysis for the Boiler BLEVE

2013 Third International Conference on Intelligent System Design and Engineering Applications, 2013
Boilers BLEVE are among the most devastating accidents likely in chemical process industry, which lead to shock waves and rocketing fragments of ruptured vessels. The prediction of the boiler explosion energy and its impact is fairly helpful to the prevention and protection of accidents.
Qu Fang
exaly   +2 more sources

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