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Phylogenetic Comparative Assembly [PDF]
Algorithms for Molecular Biology, 2009 Husemann P, Stoye J. Phylogenetic Comparative Assembly. Algorithms for Molecular Biology. 2010;5(1): 3.BACKGROUND:Recent high throughput sequencing technologies are capable of generating a huge amount of data for bacterial genome sequencing projects ...
Stoye Jens +5 more
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Frontiers in Psychology, 2021 In this article we propose a novel method to estimate the frequency distribution of linguistic variables while controlling for statistical non-independence due to shared ancestry. Unlike previous approaches, our technique uses all available data, from language families large and small as well as from isolates, while controlling for different degrees of
Gerhard Jäger, Johannes Wahle
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DNA identification of kayu kuning (yellow-fruited moonseed) from East Kalimantan, Indonesia [PDF]
Pharmaciana, 2022 Kalimantan is an island with an abundance of kayu Kuning (yellow-fruited moonseed). Kayu kuning is used for three different plant species, namely Arcangelisia flava (L.) Merr., Fibraurea tinctoria Lour., and Coscinium fenestratum (Gaertn.) Colebr ...
Riski Sulistiarini
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Jurnal Biodjati, 2023 The fishing cat (Prionailurus viverrinus) is a protected animal. Currently, the population in nature is declining due to over-fishing and changes in environmental quality.
Sunu Kuntjoro +3 more
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Diversity, 2023 Many hemiparasites attach to a range of different host species, resulting in complex parasite–host interactions. Comprehensive molecular phylogenies allow the investigation of evolutionary relationships between these host plants. We surveyed the hosts of
Zhi-Fang Liu +7 more
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Diversity, 2022 Traditional classification based on morphological characters suggests that the genus Ostericum is closely related to Angelica, but molecular phylogenetic studies suggest that the genus Ostericum is related to Pternopetalum rather than Angelica.
Qiu-Ping Jiang +4 more
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Microbial Phylogenetic Context Using Phylogenetic Outlines [PDF]
Genome Biology and Evolution, 2021 Abstract Microbial studies typically involve the sequencing and assembly of draft genomes for individual microbes or whole microbiomes. Given a draft genome, one first task is to determine its phylogenetic context, that is, to place it relative to the set of related reference genomes.
Caner Bagci +3 more
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Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations [PDF]
Systematic Biology, 2017 Abstract The goal of phylogenetic comparative methods (PCMs) is to study the distribution of quantitative traits among related species. The observed traits are often seen as the result of a Brownian Motion (BM) along the branches of a phylogenetic tree.
Bastide, Paul +4 more
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New Phytologist, 2021 SummaryPolyploidy is a dominant feature of extant plant diversity. However, major research questions, including whether polyploidy is important to long‐term evolution or is just ‘evolutionary noise’, remain unresolved due to difficulties associated with the generation and analysis of data from polyploid lineages.
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Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 2021 Crown rot (Colletotrichum siamense) of strawberry is a severe disease in Jingzhou, Hubei Province, China. Pathogen identification is the basis for disease prevention and resistance breeding.
Chun LUO, Yuyang HU, Bo SHU
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