Results 1 to 10 of about 898,542 (307)

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes [PDF]

open access: yesMolecular biology and evolution, 2021
Methods for evaluating the quality of genomic and metagenomic data are essential to aid genome assembly procedures and to correctly interpret the results of subsequent analyses.
M. Manni   +4 more
semanticscholar   +1 more source

Phylogenetic Typology [PDF]

open access: yesFrontiers in Psychology, 2021
In this article we propose a novel method to estimate the frequency distribution of linguistic variables while controlling for statistical non-independence due to shared ancestry. Unlike previous approaches, our technique uses all available data, from language families large and small as well as from isolates, while controlling for different degrees of
Gerhard Jäger, Johannes Wahle
openaire   +4 more sources

DNA identification of kayu kuning (yellow-fruited moonseed) from East Kalimantan, Indonesia [PDF]

open access: yesPharmaciana, 2022
Kalimantan is an island with an abundance of kayu Kuning (yellow-fruited moonseed). Kayu kuning is used for three different plant species, namely Arcangelisia flava (L.) Merr., Fibraurea tinctoria Lour., and Coscinium fenestratum (Gaertn.) Colebr ...
Riski Sulistiarini
doaj   +1 more source

The Vulnerable Fishing Cat Prionailurus viverrinus from Wonorejo Mangroves, Surabaya, Indonesia Based on Morphology and Molecular Data

open access: yesJurnal Biodjati, 2023
The fishing cat (Prionailurus viverrinus) is a protected animal. Currently, the population in nature is declining due to over-fishing and changes in environmental quality.
Sunu Kuntjoro   +3 more
doaj   +1 more source

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

open access: yesNucleic Acids Res., 2021
The Interactive Tree Of Life (https://itol.embl.de) is an online tool for the display, manipulation and annotation of phylogenetic and other trees. It is freely available and open to everyone.
Ivica Letunic, P. Bork
semanticscholar   +1 more source

Diverse Host Spectrum and the Parasitic Process in the Pantropical Hemiparasite Cassytha filiformis L. (Lauraceae) in China

open access: yesDiversity, 2023
Many hemiparasites attach to a range of different host species, resulting in complex parasite–host interactions. Comprehensive molecular phylogenies allow the investigation of evolutionary relationships between these host plants. We surveyed the hosts of
Zhi-Fang Liu   +7 more
doaj   +1 more source

Microbial Phylogenetic Context Using Phylogenetic Outlines [PDF]

open access: yesGenome Biology and Evolution, 2021
Abstract Microbial studies typically involve the sequencing and assembly of draft genomes for individual microbes or whole microbiomes. Given a draft genome, one first task is to determine its phylogenetic context, that is, to place it relative to the set of related reference genomes.
Caner Bagci   +3 more
openaire   +3 more sources

Plastomes Provide Insights into Differences between Morphology and Molecular Phylogeny: Ostericum and Angelica (Apiaceae) as an Example

open access: yesDiversity, 2022
Traditional classification based on morphological characters suggests that the genus Ostericum is closely related to Angelica, but molecular phylogenetic studies suggest that the genus Ostericum is related to Pternopetalum rather than Angelica.
Qiu-Ping Jiang   +4 more
doaj   +1 more source

Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations [PDF]

open access: yesSystematic Biology, 2017
Abstract The goal of phylogenetic comparative methods (PCMs) is to study the distribution of quantitative traits among related species. The observed traits are often seen as the result of a Brownian Motion (BM) along the branches of a phylogenetic tree.
Bastide, Paul   +4 more
openaire   +3 more sources

Polyploid phylogenetics [PDF]

open access: yesNew Phytologist, 2021
SummaryPolyploidy is a dominant feature of extant plant diversity. However, major research questions, including whether polyploidy is important to long‐term evolution or is just ‘evolutionary noise’, remain unresolved due to difficulties associated with the generation and analysis of data from polyploid lineages.
openaire   +2 more sources

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