Results 141 to 150 of about 850,464 (362)

Trinets encode tree-child and level-2 phylogenetic networks [PDF]

open access: yesarXiv, 2012
Phylogenetic networks generalize evolutionary trees, and are commonly used to represent evolutionary histories of species that undergo reticulate evolutionary processes such as hybridization, recombination and lateral gene transfer. Recently, there has been great interest in trying to develop methods to construct rooted phylogenetic networks from ...
arxiv  

Cryo‐EM Analysis of a Tri‐Heme Cytochrome‐Associated RC‐LH1 Complex from the Marine Photoheterotrophic Bacterium Dinoroseobacter Shibae

open access: yesAdvanced Science, EarlyView.
Cryo‐EM reveals a closed 17‐subunit LH ring encircling the RC‐LH1 complex in Dinoroseobacter shibae, featuring a novel helix‐turn‐helix subunit bridging RC and LH. Mg2⁺/Ca2⁺ stabilizes the complex, while periplasmic Cyt c₂ mediates electron transfer via a tri‐heme Cyt to the special pair of bacteriochlorophylls. Insights into energy/electron efficiency
Weiwei Wang   +12 more
wiley   +1 more source

The mitochondrial genome for tadpole of Emei moustache toad (Leptobrachium boringii: Anura: Megophryidae) from the Southwest China and its phylogenetic analysis

open access: yesMitochondrial DNA. Part B. Resources, 2019
The Emei moustache toad, Leptobrachium boringii, is an IUCN red-listed vulnerable endemic precious species in China. In this study, we first report the nearly complete mitochondrial genome of L.
Yingwen Li   +4 more
doaj   +1 more source

Bridging the gap between rooted and unrooted phylogenetic networks [PDF]

open access: yesarXiv, 2015
The need for structures capable of accommodating complex evolutionary signals such as those found in, for example, wheat has fueled research into phylogenetic networks. Such structures generalize the standard phylogenetic tree model by also allowing cycles and have been introduced in rooted and unrooted form. In contrast to phylogenetic trees, however,
arxiv  

Multiple Comparisons of Log-Likelihoods with Applications to Phylogenetic Inference

open access: yesMolecular biology and evolution, 1999
The maximum-likelihood method for inferring mo-lecular phylogeny (Felsenstein 1981) is being widelyused. The probabilistic model for generating the molec-ular sequences is specified by the substitution processand the tree topology.
Hidetoshi Shimodaira, M. Hasegawa
semanticscholar   +1 more source

ZNHIT3 Regulates Translation to Ensure Cell Lineage Differentiation in Mouse Preimplantation Development

open access: yesAdvanced Science, EarlyView.
Box C/D snoRNP complex regulates protein translation. This study identifies ZNHIT3 as a key component of the complex and ensures normal protein expression, including transcription factors orchestrating cell fate commitment, during early mouse embryogenesis.
Guanghui Yang, Qiliang Xin, Jurrien Dean
wiley   +1 more source

Next-generation sequencing yields the complete chloroplast genome of Abies kawakamii

open access: yesMitochondrial DNA. Part B. Resources, 2019
Abies kawakamii is endemic to the island of Taiwan and has been listed as a threatened species in the Red List. In present study, we reported the complete chloroplast genome of A. kawakamii. The chloroplast genome is 121,290 bp in size.
Yi-Zhen Shao   +4 more
doaj   +1 more source

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

open access: yesProceedings of the National Academy of Sciences of the United States of America, 2007
The two primary human inflammatory bowel diseases, Crohn's disease (CD) and ulcerative colitis (UC), are idiopathic relapsing disorders characterized by chronic inflammation of the intestinal tract.
D. Frank   +5 more
semanticscholar   +1 more source

Hierarchical Regulatory Networks Reveal Conserved Drivers of Plant Drought Response at the Cell‐Type Level

open access: yesAdvanced Science, EarlyView.
This study presents a comprehensive multi‐omics framework to uncover cell‐type‐specific regulatory networks in plant drought responses. By integrating transcriptomic, proteomic, and epigenetic data from nearly 30 000 samples, key regulators such as CIPK23 and NLP7 are identified, revealing insights into conserved drought tolerance mechanisms and ...
Moyang Liu   +9 more
wiley   +1 more source

The complete chloroplast genome of the endangered Pinaceae species Abies ziyuanensis and its phylogenetic implications

open access: yesMitochondrial DNA. Part B. Resources, 2019
Abies ziyuanensis is critically endangered and endemic to Guangxi and Hunan provinces of China, with no more than 600 surviving individuals. In this study, we reported the complete chloroplast (cp) genome of A. ziyuanensis.
Zhi-Xi Fu   +4 more
doaj   +1 more source

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