Results 131 to 140 of about 4,447,356 (307)

Towards a Taxonomically Intelligent Phylogenetic Database [PDF]

, 2007
This note outlines some of the key intellectual obstacles that stand in the way of creating a usable phylogenetic database. These challenges include the need to accommodate multiple taxonomic names and classifications, and the need for tools to query ...
Roderic Page
core   +1 more source

Phylogenetic Analyses of Potassium Channel Auxiliary Subunits

Microbial Physiology, 2003
Results of recent genome-sequencing projects together with advances in biochemical, molecular genetic and physiological experimentation have allowed discovery of many transport auxiliary subunits. These subunits facilitate the proper movement of substrates across cell membranes.
Erwin Z, Mangubat, Tsai-Tien, Tseng, Eric, Jakobsson   +2 more
openaire   +2 more sources

Investigations of the Evolved Molecular Basis for Terpenoid Biosynthesis in Marine Sponges

Advanced Science, EarlyView.
Confirming and extending a previous observation in another Bubarida sponge, genomic and functional analyses of A. cavernosa reveal that sponges retain the mevalonate pathway and employ single α‐domain T1TSs and UbiA‐type TSs for terpenoid biosynthesis. The absence of T1TSs clustering with other biosynthetic genes tentatively suggests, based on limited ...
Fangyan Chen, Bao Chen, Wenhui Zhang, Guifang Sun, Yao Zhao, Jianpeng Zhang, Baofu Xu   +6 more
wiley   +1 more source

The complete mitochondrial genome of the Sichuan white goose and its phylogenetic analyses

Mitochondrial DNA. Part B. Resources, 2019
Sichuan white goose (SCW) is one of the famous indigenous breeds in China. It is the first time that the complete mitochondrial genome sequence of the SCW has been reported. The total length of the mtDNA is 16,741 bp.
Qian Lin, Gui-Tao Jiang, Qiu-Zhong Dai, Xu Zhang, Xuan Huang, Chuang Li   +5 more
doaj   +1 more source

Population sequencing for phylogenetic diversity and transmission analyses

Proceedings of the National Academy of Sciences
Genomic diversity in pathogen populations is foundational for evolution and adaptation. Understanding population-level diversity is also essential for tracking sources and revealing detailed pathways of transmission and spread. For bacteria, culturing, isolating, and sequencing the large number of individual colonies required to ...
Talima Pearson, Tara Furstenau, Colin Wood, Vanessa Rigas, Kylie Drake, Jason Sahl, Sara Maltinsky, Bart J. Currie, Mark Mayo, Carina Hall, Paul Keim, Viacheslav Fofanov   +11 more
openaire   +2 more sources

Compact 9dBEs Enable Efficient and Precise Genome Editing in Mammalian Cells and In Vivo

Advanced Science, EarlyView.
As a compact type II‐D system, the Cas9d‐based platform holds great potential for in vivo applications. Through rational engineering, its derived base editors (9dBEs) enable efficient disease modeling while facilitating single‐vector AAV delivery for in vivo genome editing. These miniature tools offer a robust strategy for basic research and biomedical
Qingquan Xiao, Zhijin Tian, Luqi Weng, Kun Xu, Dingyi Han, Zhaowei Wu, Junnan Li, Shangpu Li, Qijing Zhang, Xiaohui Zhao, Guoling Li, Yinghui Wei, Zhen Gu   +12 more
wiley   +1 more source

Characterization of the complete mitochondrial genome of Drechslerella brochopaga, a fungal species trapping nematodes with constricting rings

Mitochondrial DNA. Part B. Resources, 2019
We assembled and annotated the complete mitochondrial genome of Drechslerella brochopaga. This mitogenome is a closed circular molecule of 193,195 bp in length with a GC content of 26%, including 14 protein-coding genes (PCGs), 22 transfer RNA (tRNA ...
Meiling Fang, Shaojuan Wang, Jianping Xu, Lili Jiang, Duanyong Zhou, Ke-Qin Zhang, Ying Zhang   +6 more
doaj   +1 more source

The Mitogen‐Activated Protein Kinase GhNTF3 Modulates the Arbuscular Mycorrhizal Symbiosis‐Immunity Trade‐Off in Cotton by Regulating Salicylic Acid Biosynthesis

Advanced Science, EarlyView.
AM symbiosis induces GhWAK13 to promote fungal colonization. GhNTF3 negatively regulates symbiosis by promoting SA biosynthesis. GhWAK13 sequesters GhNTF3 at the membrane, limiting its nuclear translocation and relieving SA‐mediated suppression. Under Verticillium stress, GhNTF3 enters the nucleus and interacts with GhJAZ6 to activate SA signaling ...
Shuangjie Jia, Jingshang Wen, Jihang Li, Meina Feng, Yiming He, Ruojun Liu, Qian Liu, Junli Zhang, Kai Cheng, Xiangyu Zhang, Xiao Zhang   +10 more
wiley   +1 more source

Predicting protein function with hierarchical phylogenetic profiles: The Gene3D phylo-tuner method applied to eukaryotic Genomes [PDF]

, 2007
"Phylogenetic profiling'' is based on the hypothesis that during evolution functionally or physically interacting genes are likely to be inherited or eliminated in a codependent manner.
Yeats, C, Grant, A, Ranea, JAG, Orengo, CA   +3 more
core  

Comparative plastome analyses and phylogenetic insights of Elatostema

BMC Plant Biology
Elatostema, one of the largest genera in Urticaceae, comprises approximately 570 species. The taxonomic delimitation of Elatostema and its closely related genera, Elatostematoides and Procris and the infrageneric classification of Elatostema, have historically been challenging.
Yu-Hsin Tseng, Han-Chun Chien, Geng-Xi Zhu   +2 more
openaire   +3 more sources