Applicability of several rooted phylogenetic network algorithms for representing the evolutionary history of SARS-CoV-2 [PDF]
BMC Ecology and Evolution, 2021 Background Rooted phylogenetic networks are used to display complex evolutionary history involving so-called reticulation events, such as genetic recombination.
Rosanne Wallin +3 more
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Multigene phylogeny, phylogenetic network, and morphological characterizations reveal four new arthropod-associated Simplicillium species and their evolutional relationship [PDF]
Frontiers in Microbiology, 2022 Simplicillium species are widely distributed and commonly found on various substrates. A minority of species are associated with arthropods. A spider-associated species Simplicillium araneae, and three insect-associated species, Simplicillium ...
Wanhao Chen +5 more
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Phylogenetic network of infectious bronchitis virus: exploring the impact of migratory birds on viral clustering, evolution, and recombination [PDF]
Veterinary QuarterlyInfectious bronchitis virus (IBV) presents a major threat to global poultry production, necessitating a thorough understanding of its evolutionary relationships for effective control measures.
Yu-Chen Tai, Geng-Ming Hu, Chi-Ming Chen
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eLifeEnvironmental factors can influence ecological networks, but these effects are poorly understood in the realm of the phylogeny of host-parasitoid interactions.
Ming-Qiang Wang +22 more
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Genetic Variability of PRRSV Vaccine Strains Used in the National Eradication Programme, Hungary
Vaccines, 2021 Porcine reproductive and respiratory syndrome (PRRS) is a globally spread, highly infectious viral disease. Live, attenuated vaccines against PRRS virus (PRRSV) decrease virus excretion and evoke protective immunity reducing the economic damage caused by
Ádám Bálint +10 more
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Visualizing incompatibilities in phylogenetic trees using consensus outlines
Frontiers in Bioinformatics, 2023 Phylogenetic analysis frequently leads to the creation of many phylogenetic trees, either from using multiple genes or methods, or through bootstrapping or Bayesian analysis.
Daniel H. Huson +3 more
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Embedding phylogenetic trees in networks of low treewidth [PDF]
Discrete Mathematics & Theoretical Computer Science, 2023 Given a rooted, binary phylogenetic network and a rooted, binary phylogenetic tree, can the tree be embedded into the network? This problem, called \textsc{Tree Containment}, arises when validating networks constructed by phylogenetic inference methods ...
Leo van Iersel +2 more
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The Structure of Level-2 Semi-directed Binary Phylogenetic Networks
Cumhuriyet Science Journal, 2023 Phylogenetic trees describe evolution but due to hybridization events, recombination events or lateral gene transfer, it can be represented as a phylogenetic network.
Nihan Özbaltan
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Phylogenetic Networks as Circuits With Resistance Distance
Frontiers in Genetics, 2020 Phylogenetic networks are notoriously difficult to reconstruct. Here we suggest that it can be useful to view unknown genetic distance along edges in phylogenetic networks as analogous to unknown resistance in electric circuits. This resistance distance,
Stefan Forcey, Drew Scalzo
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Insects, 2022 We studied 239 imagoes of 12 Parnassius species collected from the mountains of the Qinghai–Tibet Plateau (QTP) and its neighbouring areas in China.
Youjie Zhao +6 more
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