Results 11 to 20 of about 96,348 (290)
Rearrangement moves on rooted phylogenetic networks. [PDF]
PLoS Computational Biology, 2017 Phylogenetic tree reconstruction is usually done by local search heuristics that explore the space of the possible tree topologies via simple rearrangements of their structure.
Philippe Gambette +5 more
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Maximum Parsimony on Phylogenetic networks [PDF]
Algorithms for Molecular Biology, 2012 Background Phylogenetic networks are generalizations of phylogenetic trees, that are used to model evolutionary events in various contexts. Several different methods and criteria have been introduced for reconstructing phylogenetic trees.
Kannan Lavanya, Wheeler Ward C
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Rearranging Phylogenetic Networks
, 2021 Discrete Mathematics and ...
Remie Janssen
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Normalising phylogenetic networks [PDF]
Molecular Phylogenetics and Evolution, 2021 18 pages, 5 ...
Francis, Andrew R. (R7685) +2 more
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Labellable Phylogenetic Networks
Bulletin of Mathematical Biology, 2023 Abstract Phylogenetic networks are mathematical representations of evolutionary history that are able to capture both tree-like evolutionary processes (speciations) and non-tree-like ‘reticulate’ processes such as hybridization or horizontal gene transfer.
Andrew Francis, Mike Steel
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Planar Rooted Phylogenetic Networks
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2023 A rooted phylogenetic network is a directed acyclic graph with a single root, whose sinks correspond to a set of species. As such networks are useful for representing the evolution of species that have undergone reticulate evolution, there has been great interest in developing the theory behind and algorithms for constructing them.
Vincent Moulton, Taoyang Wu
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Uprooted Phylogenetic Networks [PDF]
Bulletin of Mathematical Biology, 2017 The need for structures capable of accommodating complex evolutionary signals such as those found in, for example, wheat has fueled research into phylogenetic networks. Such structures generalize the standard model of a phylogenetic tree by also allowing for cycles and have been introduced in rooted and unrooted form.
Gambette, Philippe +2 more
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Distinguishing Phylogenetic Networks [PDF]
SIAM Journal on Applied Algebra and Geometry, 2018 Phylogenetic networks are becoming increasingly popular in phylogenetics since they have the ability to describe a wider range of evolutionary events than their tree counterparts. In this paper, we study Markov models on phylogenetic networks and their associated geometry.
Gross, Elizabeth, Long, Colby
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Counting Phylogenetic Networks [PDF]
Annals of Combinatorics, 2015 zbMATH Open Web Interface contents unavailable due to conflicting licenses.
McDiarmid, C., Semple, C., Welsh, D.
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Orienting undirected phylogenetic networks
Journal of Computer and System Sciences, 2023 This paper studies the relationship between undirected (unrooted) and directed (rooted) phylogenetic networks. We describe a polynomial-time algorithm for deciding whether an undirected nonbinary phylogenetic network, given the locations of the root and reticulation vertices, can be oriented as a directed nonbinary phylogenetic network.
Huber, Katharina T. (author) +6 more
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