Results 31 to 40 of about 6,848,180 (327)

Phylogenetic Network Analyses Reveal the Influence of Transmission Clustering on the Spread of HIV Drug Resistance in Quebec from 2002 to 2022. [PDF]

Viruses
Brenner BG, Ibanescu RI, Oliveira M, Margaillan G, Lebouché B, Thomas R, Baril JG, Lorgeoux RP, Roger M, Routy JP, The Montreal Primary Hiv Infection Phi Cohort Study Group.   +10 more
europepmc   +3 more sources

Phylogenetic comparative methods on phylogenetic networks with reticulations [PDF]

Systematic Biology, 2017
Abstract The goal of phylogenetic comparative methods (PCMs) is to study the distribution of quantitative traits among related species. The observed traits are often seen as the result of a Brownian Motion (BM) along the branches of a phylogenetic tree.
Paul Bastide, Claudia Solís‐Lemus, Ricardo Kriebel, K. William Sparks, Cécile Ané   +4 more
openalex   +5 more sources

PhyloFusion-Fast and Easy Fusion of Rooted Phylogenetic Trees into Rooted Phylogenetic Networks. [PDF]

Syst Biol
Zhang L, Cetinkaya B, Huson DH.
europepmc   +3 more sources

Comparing the topology of phylogenetic network generators [PDF]

J. Bioinform. Comput. Biol., 2021
Phylogenetic networks represent evolutionary history of species and can record natural reticulate evolutionary processes such as horizontal gene transfer and gene recombination.
Remie Janssen, Pengyu Liu
semanticscholar   +1 more source

Normalising phylogenetic networks [PDF]

Molecular Phylogenetics and Evolution, 2021
18 pages, 5 ...
Francis, Andrew R. (R7685), Huson, Daniel H., Steel, Mike   +2 more
openaire   +4 more sources

Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis. [PDF]

Mol Ecol, 2016
Wen D, Yu Y, Hahn MW, Nakhleh L.
europepmc   +2 more sources

QUARTETS AND UNROOTED PHYLOGENETIC NETWORKS [PDF]

Journal of Bioinformatics and Computational Biology, 2012
Phylogenetic networks were introduced to describe evolution in the presence of exchanges of genetic material between coexisting species or individuals. Split networks in particular were introduced as a special kind of abstract network to visualize conflicts between phylogenetic trees which may correspond to such exchanges.
Philippe Gambette, Vincent Berry, Christophe Paul   +2 more
openalex   +4 more sources

Characterizing semi-directed phylogenetic networks and their multi-rootable variants. [PDF]

Theory Biosci
Holtgrefe N, Huber KT, van Iersel L, Jones M, Moulton V.   +4 more
europepmc   +2 more sources

When are Quarnets Sufficient to Reconstruct Semi-directed Phylogenetic Networks? [PDF]

Bull Math Biol
Huber KT, Iersel LV, Jones M, Moulton V, Veenema-Nipius L.   +4 more
europepmc   +3 more sources

Labellable Phylogenetic Networks

Bulletin of Mathematical Biology, 2023
Abstract Phylogenetic networks are mathematical representations of evolutionary history that are able to capture both tree-like evolutionary processes (speciations) and non-tree-like ‘reticulate’ processes such as hybridization or horizontal gene transfer.
Andrew Francis, Mike Steel
openaire   +4 more sources