Results 51 to 60 of about 96,348 (290)
BMC Bioinformatics, 2005 Background Phylogenetic approaches are commonly used to predict which amino acid residues are critical to the function of a given protein. However, such approaches display inherent limitations, such as the requirement for identification of multiple ...
Bredesen Dale E +2 more
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CSD Homomorphisms between Phylogenetic Networks [PDF]
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2012 19 pages, 3 ...
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Leaf-Reconstructibility of Phylogenetic Networks [PDF]
SIAM Journal on Discrete Mathematics, 2018 An important problem in evolutionary biology is to reconstruct the evolutionary history of a set $X$ of species. This history is often represented as a phylogenetic network, that is, a connected graph with leaves labelled by elements in $X$ (for example, an evolutionary tree), which is usually also binary, i.e. all vertices have degree 1 or 3. A common
Leo van Iersel, Vincent Moulton
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FEBS Letters, EarlyView.Phototrophs evolved light‐harvesting systems adapted for efficient photon capture in habitats enriched in far‐red radiation. A subset of eukaryotic pigment‐binding proteins can absorb far‐red photons via low‐energy chlorophyll states known as red forms.
Antonello Amelii +8 more
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MathematicsThe mathematical side of applied problems in multiple subject areas (biology, pattern recognition, etc.) is reduced to the problem of discrete optimization in the following mathematical method.
Konstantin Gorbunov, Vassily Lyubetsky
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Phylogenetic Network for European mtDNA [PDF]
The American Journal of Human Genetics, 2001 The sequence in the first hypervariable segment (HVS-I) of the control region has been used as a source of evolutionary information in most phylogenetic analyses of mtDNA. Population genetic inference would benefit from a better understanding of the variation in the mtDNA coding region, but, thus far, complete mtDNA sequences have been rare.
Finnilä, Saara +2 more
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Molecular bases of circadian magnesium rhythms across eukaryotes
FEBS Letters, EarlyView.Circadian rhythms in intracellular [Mg2+] exist across eukaryotic kingdoms. Central roles for Mg2+ in metabolism suggest that Mg2+ rhythms could regulate daily cellular energy and metabolism. In this Perspective paper, we propose that ancestral prokaryotic transport proteins could be responsible for mediating Mg2+ rhythms and posit a feedback model ...
Helen K. Feord, Gerben van Ooijen
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A comparison of phylogenetic network methods using computer simulation. [PDF]
PLoS ONE, 2008 We present a series of simulation studies that explore the relative performance of several phylogenetic network approaches (statistical parsimony, split decomposition, union of maximum parsimony trees, neighbor-net, simulated history recombination upper ...
Steven M Woolley +2 more
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Inferring Phylogenetic Networks Using PhyloNet [PDF]
Systematic Biology, 2017 AbstractPhyloNet was released in 2008 as a software package for representing and analyzing phylogenetic networks. At the time of its release, the main functionalities in PhyloNet consisted of measures for comparing network topologies and a single heuristic for reconciling gene trees with a species tree. Since then, PhyloNet has grown significantly. The
Wen, Dingqiao +3 more
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Recombinant Proteins: A Molecular Tool to Understand Marine Adhesion and to Advance Biomaterials
Advanced Healthcare Materials, EarlyView.The production of recombinant proteins represents a fundamental step in the characterisation of marine invertebrate adhesives and in the development of bio‐inspired glues. The association of these proteins with other components such as ions, proteins, polysaccharides, or polymers enables the fabrication of biomaterials for various healthcare ...
Alessandra Whaite +4 more
wiley +1 more source