Results 61 to 70 of about 96,348 (290)
Consistency of the Neighbor-Net Algorithm
Algorithms for Molecular Biology, 2007 Background Neighbor-Net is a novel method for phylogenetic analysis that is currently being widely used in areas such as virology, bacteriology, and plant evolution.
Moulton Vincent +2 more
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ENJ algorithm can construct triple phylogenetic trees
Molecular Therapy: Nucleic Acids, 2021 Phylogenetic analysis is used to analyze the evolution of species according to the characteristics of biological sequences. The analytical results are generally represented by phylogenetic trees.
Yan Hong, Maozu Guo, Juan Wang
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On Tree-Based Phylogenetic Networks [PDF]
Journal of Computational Biology, 2016 A large class of phylogenetic networks can be obtained from trees by the addition of horizontal edges between the tree edges. These networks are called tree based networks. Reticulation-visible networks and child-sibling networks are all tree based. In this work, we present a simply necessary and sufficient condition for tree-based networks and prove ...
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A Space of Phylogenetic Networks [PDF]
SIAM Journal on Applied Algebra and Geometry, 2017 23 pages, 20 ...
Devadoss, Satyan L., Petti, Samantha
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Phylogenetic inference using Generative Adversarial Networks
Bioinformatics, 2022 AbstractMotivationThe application of machine learning approaches in phylogenetics has been impeded by the vast model space associated with inference. Supervised machine learning approaches require data from across this space to train models. Because of this, previous approaches have typically been limited to inferring relationships among unrooted ...
Megan L. Smith, Matthew W. Hahn
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Gradients of Aliveness and Engineering: A Taxonomy of Fungal Engineered Living Materials
Advanced Materials, EarlyView.This paper explores the potential of fungal engineered living materials (ELMs), examining fungal biology and growth mechanisms, which underpin their development. It presents a classification framework based on aliveness, scaffold composition, and engineering degree. Unique properties such as self‐healing, biosensing, and bioremediation are highlighted,
Elise Elsacker +5 more
wiley +1 more source
Improved Layout of Phylogenetic Networks [PDF]
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008 Split networks are increasingly being used in phylogenetic analysis. Usually, a simple equal angle algorithm is used to draw such networks, producing layouts that leave much room for improvement. Addressing the problem of producing better layouts of split networks, this paper presents an algorithm for maximizing the area covered by the network ...
Philippe, Gambette, Daniel H, Huson
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Advanced Robotics Research, EarlyView.Embedded flexible sensing technologies advance underwater soft robotics, yet most systems still suffer from hysteresis and limited perceptiveness. Instead, vision‐based tactile sensors provide reliable and rapid feedback essential for complex underwater tasks.
Qiyi Zhang +5 more
wiley +1 more source
Advanced Synthesis &Catalysis, EarlyView.We show how engineered ancestral amide bond synthetases (ABSs) together with cofactor recycling using a single polyphosphate kinase paves the way for chemoenzymatic synthesis of pharmacophores. The figure illustrates how ancestral ABS has a more flexible C‐terminal domain, which is associated with enhanced catalytic performance and expanded amine scope.
Elisabeth Söderberg +5 more
wiley +1 more source
Characterization of phylogenetic networks with NetTest [PDF]
BMC Bioinformatics, 2010 Typical evolutionary events like recombination, hybridization or gene transfer make necessary the use of phylogenetic networks to properly depict the evolution of DNA and protein sequences. Although several theoretical classes have been proposed to characterize these networks, they make stringent assumptions that will likely not be met by the ...
Arenas, Miguel +3 more
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