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Connectome topology of mammalian brains and its relationship to taxonomy and phylogeny
Frontiers in Neuroscience, 2023 Network models of anatomical connections allow for the extraction of quantitative features describing brain organization, and their comparison across brains from different species.
Joshua Faskowitz +13 more
doaj +1 more source
Frin: An Efficient Method for Representing Genome Evolutionary History
Frontiers in Genetics, 2019 Phylogenetic analysis is important in understanding the process of biological evolution, and phylogenetic trees are used to represent the evolutionary history.
Yan Hong, Juan Wang
doaj +1 more source
Practical Aspects of Phylogenetic Network Analysis Using PhyloNet
bioRxiv, 2019 Phylogenetic networks extend trees to enable simultaneous modeling of both vertical and horizontal evolutionary processes. PhyloNet is a software package that has been under constant development for over 10 years and includes a wide array of ...
Zhen Cao +4 more
semanticscholar +1 more source
Food web reconstruction through phylogenetic transfer of low‐rank network representation
Methods in Ecology and Evolution, 2021 Despite their importance in many ecological processes, collecting data and information on ecological interactions is an exceedingly challenging task. For this reason, large parts of the world have a data deficit when it comes to species interactions and ...
T. Strydom +12 more
semanticscholar +1 more source
Rank Conditions on Phylogenetic Networks [PDF]
, 2021 5 pages, 1 figure. This paper will appear in Research Perspectives CRM Barcelona, Spring 2019, vol.
Casanellas Rius, Marta +1 more
openaire +3 more sources
Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets [PDF]
, 2014 Binets and trinets are phylogenetic networks with two and three leaves, respectively. Here we consider the problem of deciding if there exists a binary level-1 phylogenetic network displaying a given set T of binary binets or trinets over a taxon set X ...
AV Aho +25 more
core +6 more sources
Do Branch Lengths Help to Locate a Tree in a Phylogenetic Network? [PDF]
Bulletin of Mathematical Biology, 2016 Phylogenetic networks are increasingly used in evolutionary biology to represent the history of species that have undergone reticulate events such as horizontal gene transfer, hybrid speciation and recombination.
Philippe Gambette +4 more
semanticscholar +1 more source
, 2020 Phylogenetics is the study of the evolutionary relationships between organisms. One of the main challenges in the field is to take biological data for a group of organisms and to infer an evolutionary tree, a graph that represents these relationships.
Gross, Elizabeth +2 more
openaire +2 more sources
QS-Net: Reconstructing Phylogenetic Networks Based on Quartet and Sextet
Frontiers in Genetics, 2019 Phylogenetic networks are used to estimate evolutionary relationships among biological entities or taxa involving reticulate events such as horizontal gene transfer, hybridization, recombination, and reassortment.
Ming Tan +9 more
doaj +1 more source
Classes of tree-based networks
Visual Computing for Industry, Biomedicine, and Art, 2020 Recently, so-called tree-based phylogenetic networks have attracted considerable attention. These networks can be constructed from a phylogenetic tree, called the base tree, by adding additional edges.
Mareike Fischer +4 more
doaj +1 more source