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Description of Male, Redescription of Female, Host Record, and Phylogenetic Position of Haemaphysalis danieli. [PDF]

open access: yesPathogens, 2022
Haemaphysalis ticks are globally distributed with the greatest diversity in the Oriental region. This study aimed to primarily provide information on the morphology, host record, and preliminary phylogenetic position of a poorly known tick Haemaphysalis ...
Ahmad I   +9 more
europepmc   +2 more sources

AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications [PDF]

open access: yesBMC Genomics, 2013
Background Due to the rapid progress of next-generation sequencing (NGS) facilities, an explosion of human whole genome data will become available in the coming years.
Van Geystelen Anneleen   +2 more
doaj   +2 more sources

Comparative genomic analysis and phylogenetic position of Theileria equi

open access: yesBMC Genomics, 2012
Background Transmission of arthropod-borne apicomplexan parasites that cause disease and result in death or persistent infection represents a major challenge to global human and animal health.
Kappmeyer Lowell S   +16 more
doaj   +2 more sources

A deeply branching thermophilic bacterium with an ancient acetyl-CoA pathway dominates a subsurface ecosystem [PDF]

open access: yes, 2012
A nearly complete genome sequence of Candidatus ‘Acetothermum autotrophicum’, a presently uncultivated bacterium in candidate division OP1, was revealed by metagenomic analysis of a subsurface thermophilic microbial mat community.
A Stamatakis   +69 more
core   +12 more sources

Software Choice and Sequencing Coverage Can Impact Plastid Genome Assembly–A Case Study in the Narrow Endemic Calligonum bakuense

open access: yesFrontiers in Plant Science, 2022
Most plastid genome sequences are assembled from short-read whole-genome sequencing data, yet the impact that sequencing coverage and the choice of assembly software can have on the accuracy of the resulting assemblies is poorly understood. In this study,
Eka Giorgashvili   +6 more
doaj   +1 more source

Chloroplast genome structure and phylogenetic position of Lophatherum gracile

open access: yesMitochondrial DNA. Part B. Resources, 2021
Lophatherum gracile is distributed in south China, Japan and South Asia, and it is wild in the valley, stream, woodland, forest edge and gully edge. In this study, the complete chloroplast genome sequence of Lophatherum gracile was successfully obtained ...
Caibi Zhou   +8 more
doaj   +1 more source

Complete mitochondrial genome of the little-known regional endemic Aporia hastata (Oberthür, 1892) (Lepidoptera: Pieridae)

open access: yesMitochondrial DNA. Part B. Resources, 2023
The present study reports the mitochondrial genome of A. hastata (Oberthür, 1892), a little-known Aporia species endemic to the southern margin of the Hengduan Mountains in Yunnan Province. This genome is circular, 15,148 bp in length, and consists of 13
Ya-Qi Jia, Xin Zhang, Shao-Ji Hu
doaj   +1 more source

Characterization of the complete mitochondrial genome and phylogenetic analysis of bean thrips Megalurothrips usitatus (Bagnall, 1913) (Thysanoptera: thripidae)

open access: yesMitochondrial DNA. Part B. Resources, 2023
Megalurothrips usitatus (Bagnall, 1913) (Thysanoptera: Thripidae) is a widely distributed pest in Asia that primarily affects the production of snap beans and cowpea.
Lin Xing-Ming   +3 more
doaj   +1 more source

Novel Gene Rearrangement Pattern in Pachycrepoideus vindemmiae Mitochondrial Genome: New Gene Order in Pteromalidae (Hymenoptera: Chalcidoidea)

open access: yesAnimals, 2023
The mitochondrial genomes of Muscidifurax similadanacus, M. sinesensilla, Nasonia vitripennis, and Pachycrepoideus vindemmiae were sequenced to better understand the structural evolution of Pteromalidae mitogenomes.
Yixin Huang   +5 more
doaj   +1 more source

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