Results 171 to 180 of about 5,976,385 (321)

Leveraging phylogenetic signal to unravel microbiome function and assembly rules. [PDF]

Comput Struct Biotechnol J, 2023
Talavera-Marcos S, Parras-Moltó M, Aguirre de Cárcer D.   +2 more
europepmc   +1 more source

Phylogenetic signal in morphometric data [PDF]

Cladistics, 2010
Ronald M. Clouse, Benjamin L. de Bivort, Gonzalo Giribet   +2 more
openaire   +1 more source

Dual‐Key Genetic Circuit Enables Stable and Self‐Regulated Engineered Bacteria for the Treatment of Ulcerative Colitis

Advanced Science, EarlyView.
A self‐regulated Escherichia coli Nissle 1917 strain equipped with a dual‐key genetic circuit achieved antibiotic‐free stability and programmable lysis for therapeutic protein delivery. By co‐expressing an IL‐2 mutant and Amuc_1100, the engineered bacteria restored immune balance and epithelial integrity, providing a safe and precise approach for ...
Shuaijie Ding, Biao Yang, Xinyu Li, Yi Wang, Chunyu Huang, Wenfei Dong, Wei Xie   +6 more
wiley   +1 more source

Coupled Phylogenetic and Functional Enrichment in the Tomato Rhizosphere Microbiome

Phytobiomes Journal
Plant–microbe interactions occur mainly in the rhizosphere, a hot spot of microbial activity and diversity, and the outcome of these interactions can significantly affect plant productivity.
Silvia Talavera-Marcos, Ramón Gallego, Rubén Chaboy-Cansado, Alberto Rastrojo, Daniel Aguirre de Cárcer   +4 more
doaj   +1 more source

Testing phylogenetic signal with categorical traits and tree uncertainty. [PDF]

Bioinformatics, 2023
Ribeiro D, Borges R, Rocha AP, Antunes A.   +3 more
europepmc   +1 more source

TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE

Evolution; international journal of organic evolution, 2003
S. Blomberg, T. Garland, A. Ives
semanticscholar   +1 more source

MicrobeDiscover: A Knowledge Graph–Enabled AI Framework for Identifying Microbes for Inorganic Nanomaterial Biosynthesis

Advanced Science, EarlyView.
Microbial synthesis of nanomaterials (NMs) is eco‐friendly, but the screening of microorganisms is limited by inefficient traditional methods (currently only involving∽400 microorganisms/90 NMs). We propose AI framework MicrobeDiscover, integrating a knowledge graph of microbe‐NM interactions.
Ludi Wang, Hexing Han, Yufeng Liu, Zhiyuan Ning, Yujie Ma, Haidan Wang, Jinling Xu, Qiansheng Huang, Wenjuan Cui, Yuanchun Zhou, Yang Gao, Bin Wang, Yi Du   +12 more
wiley   +1 more source

Phylogenetic signal in gut microbial community rather than in rodent metabolic traits. [PDF]

Natl Sci Rev, 2023
Zhang XY, Khakisahneh S, Liu W, Zhang X, Zhai W, Cheng J, Speakman JR, Wang DH.   +7 more
europepmc   +1 more source

A Guide for Spatial Omics Technologies: Innovation, Evaluation, and Application

Advanced Science, EarlyView.
This review presents a strategy‐centric framework for spatial omics technologies, organizing methods by how spatial information is experimentally encoded. It compares key performance trade‐offs across sequencing‐ and imaging‐based approaches, examines computational and practical limitations, and highlights biomedical applications. The analysis provides
Xiaofeng Wu, Weize Xu, Da Lin, Leqiang Sun, Jinxia Dai, Gang Cao   +5 more
wiley   +1 more source

Rapid Proteome‐Wide Discovery of Protein–Protein Interactions With ppIRIS

Advanced Science, EarlyView.
ppIRIS is a lightweight deep learning framework for proteome‐wide protein–protein interaction prediction directly from sequence. By fusing evolutionary and structural embeddings with a regularized Siamese architecture, ppIRIS achieves state‐of‐the‐art accuracy across species, enables minute‐scale screening, and reveals biologically validated bacterial ...
Luiz Felipe Piochi, Di Tang, Johan Malmström, Yasaman Karami, Hamed Khakzad   +4 more
wiley   +1 more source