Results 121 to 130 of about 501,430 (279)

Model checking software for phylogenetic trees using distribution and database methods

open access: yesJournal of Integrative Bioinformatics, 2013
Model checking, a generic and formal paradigm stemming from computer science based on temporal logics, has been proposed for the study of biological properties that emerge from the labeling of the states defined over the phylogenetic tree.
Requeno José Ignacio   +1 more
doaj   +1 more source

Locating a tree in a phylogenetic network [PDF]

open access: yesarXiv, 2010
Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a phylogenetic network and a cluster of species, the Cluster Containment problem asks whether the given cluster is a ...
arxiv  

Pangenome Analysis of the Plant Pathogen Pseudomonas syringae Reveals Unique Natural Products for Niche Adaptation

open access: yesAngewandte Chemie International Edition, Accepted Article.
Pseudomonas syringae is a soil‐dwelling bacterium that exhibits remarkable niche adaptability and it is known for its devastating impact as a plant pathogen. This bacterium has an outstanding capability to produce a wide array of biologically active natural products. P.
Shuaibing Zhang   +7 more
wiley   +1 more source

Fusang: a framework for phylogenetic tree inference via deep learning. [PDF]

open access: yesNucleic Acids Res, 2023
Wang Z   +9 more
europepmc   +1 more source

EvoZip: Efficient Compression of Large Collections of Evolutionary Trees [PDF]

open access: yesarXiv, 2019
Phylogenetic trees represent evolutionary relationships among sets of organisms. Popular phylogenetic reconstruction approaches typically yield hundreds to thousands of trees on a common leafset. Storing and sharing such large collection of trees requires considerable amount of space and bandwidth.
arxiv  

PhyloDraw: a phylogenetic tree drawing system [PDF]

open access: bronze, 2000
Jeong-Hyeon Choi   +3 more
openalex   +1 more source

Analysis of plant metabolomics data using identification‐free approaches

open access: yesApplications in Plant Sciences, EarlyView.
Abstract Plant metabolomes are structurally diverse. One of the most popular techniques for sampling this diversity is liquid chromatography–mass spectrometry (LC‐MS), which typically detects thousands of peaks from single organ extracts, many representing true metabolites.
Xinyu Yuan   +2 more
wiley   +1 more source

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