Results 151 to 160 of about 17,330 (247)

Haplotype‑resolved comparison of transcription factor superfamilies between wild and cultivated autotetraploid green jujube and prioritization of candidate transcription factors via machine learning

The Plant Genome, Volume 19, Issue 2, June 2026.
Abstract A framework beyond single‐reference genomes is needed to understand transcription factor evolution. This study employed an integrated haplotype‑resolved genomes–transcriptome atlas–machine learning to characterize the transcription factors of autotetraploid green jujube (Ziziphus mauritiana).
Xudong Zhu, Pengyan Chang, Yanzhen Liao, Huini Wu, Fan Jiang   +4 more
wiley   +1 more source

IQ-TREE 3: phylogenomic inference software using complex evolutionary models. [PDF]

Mol Biol Evol
Wong TKF, Ly-Trong N, Ren H, Demotte P, Baños H, Roger AJ, Susko E, Bielow C, De Maio N, Goldman N, Hahn MW, Dos Reis M, Vinh LS, Huttley G, Lanfear R, Minh BQ.   +15 more
europepmc   +1 more source

Kineochelins—A New Group of Siderophores From an Antarctic Bacterium

Microbial Biotechnology, Volume 19, Issue 6, June 2026.
Genome‐guided analysis of an Antarctic Actinokineospora strain led to the discovery of kineochelins, a new group of siderophores involved in iron sequestration and microbial competition. Kineochelin production inhibits co‐occurring bacteria and clinically relevant yeasts, highlighting Antarctic microorganisms as promising sources of bioactive natural ...
Stanislava Kralova, Peter Spacek, Johannes Gafriller, Matej Bezdicek, Viktoria Medvedcova, Joana Séneca, Jay Osvatic, Ulrike Grienke, Thomas Rattei, Olga N. Sekurova, Sergey B. Zotchev, Martin Zehl, Alexander Loy   +12 more
wiley   +1 more source

Single-Cell Transcriptomes and Phylogenomic Analysis of Uncultivated Oxymonads. [PDF]

J Eukaryot Microbiol
Trznadel M, Lax G, Boscaro V, Scheffrahn RH, Nalepa CA, Kolisko M, Keeling PJ.   +6 more
europepmc   +1 more source

Polyphasic Characterization of Acetobacter indonesiensis UNPADCC 01‐5 Isolated From a Traditional Fermented Food, Oncom Merah

Environmental Microbiology Reports, Volume 18, Issue 3, June 2026.
The polyphasic approach (morphology, physiology, biochemistry and genetics) was used to characterize Acetobacter indonesiensis strain UNPADCC 01‐5, which was isolated from oncom merah. The strain's potential as a culture for acidic fermentations and a biofunctional agent was supported by its adaptive characteristics, which included acid tolerance ...
Yolani Syaputri, Erisa Zahra, Rianti Nur Azzahra, Annisa, Diffa Amanda Iswhara, Felice Olivia Lengkey, Syiffa Fauzia, Xiwu Jia, Asri Peni Wulandari, Ratu Safitri   +9 more
wiley   +1 more source

Reliable Inference of Phylogenomic Relationship via Assembly-Based Strategy Accommodating Raw Reads and Proteins. [PDF]

Mol Ecol Resour
Li Y, Liu X, Chen C, Qiu JW, Kocot KM, Sun J.   +5 more
europepmc   +1 more source

Complete Genome of an Alkali‐Resistant Rhizobium anhuiense Symbiont of Pea Reveals Species‐Specific Plasmid Fusion and Genomic Plasticity

Environmental Microbiology Reports, Volume 18, Issue 3, June 2026.
Rhizobium anhuiense strain Xianghu001 is an alkali‐tolerant, nitrogen‐fixing symbiont isolated from pea (Pisum sativum) root nodules. Genome sequencing revealed a lineage‐specific megaplasmid fusion and high plasmid plasticity. Functional assays confirmed its plant growth‐promoting traits, including increased total nitrogen content and IAA production ...
Jiashun Miao, Chi Zhang, Qifan Jiang, Zhangliang Yao, Kuirong Cao, Jie Chen, Hua Wang, Na Liu   +7 more
wiley   +1 more source

Limnofasciculus delicatus (Coleofasciculaceae, Coleofasciculales), a Novel Mat‐Forming Cyanobacterium From Shenandoah River, Virginia, USA

Environmental Microbiology Reports, Volume 18, Issue 3, June 2026.
A novel mat‐forming benthic freshwater cyanobacterium, Limnofasciculus delicatus, is described based on morphological, phylogenetic and genomic evidence from the North and South Forks of the Shenandoah River. Although Limnofasciculus delicatus lacks biosynthetic gene clusters associated with the production of known cyanotoxins, it occurs in association
Rosalina Stancheva, Cecilio Valadez‐Cano, Benoit Van Aken, Gordon M. Selckmann, Janice Lawrence, A. Bruce Cahoon   +5 more
wiley   +1 more source

A comprehensive phylogenomic framework for cycads (Cycadales). [PDF]

PhytoKeys
Calonje M, Clugston JAR, Coiro M.
europepmc   +1 more source

Comparative Analysis of Diversification Rates in Clonal and Non‐Clonal Flowering Plants

Ecology Letters, Volume 29, Issue 6, June 2026.
Using data from 16,465 angiosperm species across 2,997 genera, we classified genera as clonal, mixed, or non‐clonal and estimated diversification using genus‐level phylogeny with DR, MoM, and BAMM. Clonal genera consistently showed lower diversification rates than mixed and non‐clonal genera across all methods.
Sonia Kadyan, Jitka Klimešová, Dimitar Dimitrov, Zhiheng Wang, Jan Smyčka, Tomáš Herben   +5 more
wiley   +1 more source