Results 11 to 20 of about 17,330 (247)

Buscogeny: A BUSCO leveraged phylogenomic tree builder. [PDF]

Int Microbiol
Abstract Accurately resolving evolutionary relationships among organisms is a cornerstone of evolutionary biology, with phylogenetic trees serving as critical tools for this purpose. While single-gene phylogenies are widely used, they often fail to capture the full complexity of evolutionary processes ...
Webster J, Chapman TA.
europepmc   +3 more sources

A Comprehensive Phylogenomic Platform for Exploring the Angiosperm Tree of Life [PDF]

Systematic Biology, 2021
Abstract The tree of life is the fundamental biological roadmap for navigating the evolution and properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering plants) are fraught with data gaps, despite their critical role in sustaining terrestrial life.
Baker, William J., Bailey, Paul, Barber, Vanessa, Barker, Abigail, Bellot, Sidonie, Bishop, David, Botigué, Laura R., Brewer, Grace E., Carruthers, Tom, Clarkson, James J., Cook, Jeffrey, Cowan, Robyn S., Dodsworth, Steven, Epitawalage, Niroshini, Françoso, Elaine, Gallego, Berta, Johnson, Matthew G., Kim, Jan T., Leempoel, Kevin, Maurin, Olivier, McGinnie, Catherine, Pokorny, Lisa, Stone, Roy, Shyamali, Stone, Malcolm, Toledo, Eduardo, Wickett, Norman J., Zuntini, Alexandre R., Eiserhardt, Wolf L., Kersey, Paul J., Leitch, Ilia J., Forest, Felix   +31 more
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Phylogenomics and the reconstruction of the tree of life [PDF]

Nature Reviews Genetics, 2005
As more complete genomes are sequenced, phylogenetic analysis is entering a new era - that of phylogenomics. One branch of this expanding field aims to reconstruct the evolutionary history of organisms on the basis of the analysis of their genomes. Recent studies have demonstrated the power of this approach, which has the potential to provide answers ...
Delsuc, Frédéric, Brinkmann, Henner, Philippe, Hervé   +2 more
openaire   +3 more sources

A Phylogenomic Approach to Resolve the Arthropod Tree of Life [PDF]

Molecular Biology and Evolution, 2010
Arthropods were the first animals to conquer land and air. They encompass more than three quarters of all described living species. This extraordinary evolutionary success is based on an astoundingly wide array of highly adaptive body organizations.
Meusemann, Karen, Reumont, von, Björn M., Simon, Sabrina, Roeding, Falko, Strauss, Sascha, Kück, Patrick, Ebersberger, Ingo, Walzl, Manfred, Pass, Günther, Breuers, Sebastian, Achter, Viktor, von Haeseler, Arndt, Burmester, Thorsten, Hadrys, Heike, Wägele, Johann Wolfgang, Misof, Bernhard   +15 more
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Spider phylogenomics: untangling the Spider Tree of Life [PDF]

PeerJ, 2015
Spiders (Order Araneae) are massively abundant generalist arthropod predators that are found in nearly every ecosystem on the planet and have persisted for over 380 million years. Spiders have long served as evolutionary models for studying complex mating and web spinning behaviors, key innovation and adaptive radiation hypotheses, and have been ...
Nicole L Garrison, Juanita Rodriguez, Ingi Agnarsson, Jonathan A Coddington, Charles E Griswold, Christopher A Hamilton, Marshal Hedin, Kevin M Kocot, Joel M Ledford, Jason E Bond   +9 more
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Generation of accurate, expandable phylogenomic trees with uDance

Nature Biotechnology, 2023
Phylogenetic trees provide a framework for organizing evolutionary histories across the tree of life and aid downstream comparative analyses such as metagenomic identification. Methods that rely on single-marker genes such as 16S rRNA have produced trees of limited accuracy with hundreds of thousands of organisms, whereas methods that use genome-wide ...
Metin Balaban, Yueyu Jiang, Qiyun Zhu, Daniel McDonald, Rob Knight, Siavash Mirarab   +5 more
openaire   +4 more sources

A phylogenomic resolution of the sea urchin tree of life [PDF]

BMC Evolutionary Biology, 2018
Abstract Background Echinoidea is a clade of marine animals including sea urchins, heart urchins, sand dollars and sea biscuits. Found in benthic habitats across all latitudes, echinoids are key components of marine communities such as coral reefs and kelp forests. A little over 1,000 species inhabit
Nicolás Mongiardino Koch, Simon E. Coppard, H. A. Lessios, Derek E. G. Briggs, Rich Mooi, Greg W. Rouse   +5 more
openaire   +4 more sources

Phylogenomics reveal a robust fungal tree of life [PDF]

FEMS Yeast Research, 2006
Our understanding of the tree of life (TOL) is still fragmentary. Until recently, molecular phylogeneticists have built trees based on ribosomal RNA sequences and selected protein sequences, which, however, usually suffered from lack of support for the deeper branches and inconsistencies probably due to limited subsampling of the entire genome.
Kuramae, E.E., Robert, V., Snel, B., Weiss, M., Boekhout, T.   +4 more
openaire   +3 more sources

Tree House Explorer: A Novel Genome Browser for Phylogenomics [PDF]

Molecular Biology and Evolution, 2022
Abstract Tree House Explorer (THEx) is a genome browser that integrates phylogenomic data and genomic annotations into a single interactive platform for combined analysis. THEx allows users to visualize genome-wide variation in evolutionary histories and genetic divergence on a chromosome-by-chromosome basis, with continuous sliding ...
Andrew J. Harris, Nicole M. Foley, Tiffani L. Williams, William J. Murphy   +3 more
openaire   +2 more sources

Rooting the eutherian tree: the power and pitfalls of phylogenomics [PDF]

Genome Biology, 2007
Abstract Background Ongoing genome sequencing projects have led to a phylogenetic approach based on genome-scale data (phylogenomics), which is beginning to shed light on longstanding unresolved phylogenetic issues.
Hidenori Nishihara, Norihiro Okada, Masami Hasegawa   +2 more
openaire   +2 more sources