Results 61 to 70 of about 3,564,449 (254)

Location for the data, the software pipeline, and resources required for setting up the pipeline.

, 2015
Location for the data, the software pipeline, and resources required for setting up the pipeline.
J. Michael Cherry (5627), Benjamin J. A. Dickins (703565), Stacia Engel (703566), Barbara Dunn (393141), Giltae Song (703564), Janos Demeter (5547)   +5 more
core   +1 more source

Unique circulating miRNAome signatures captured with distinct molecular states in Lynch syndrome and sporadic colorectal cancer

Molecular Oncology, EarlyView.
Circulating microRNA profiles distinguish nonmalignant Lynch syndrome from cancer‐associated Lynch syndrome, sporadic colorectal cancer, and healthy controls. Age‐stratified analysis reveals disease‐specific regulatory states, and a six‐miRNA panel shows concordant separation in an independent colorectal tissue cohort.
Ramadhani Salum Chambuso, Md Shohel Ul Islam, Rosa M Xicola, Raj Ramesar, Xavier Llor, Sinclair Steele   +5 more
wiley   +1 more source

Virus assembly pipeline

, 2023
Pipeline used for assembly of viral contigs from metaviromic data obtained from a marine mesocosm ...
Benedikt Heyerhoff (14663993)
core   +1 more source

Automated FRAP microscopy for high‐throughput analysis of protein dynamics in chromatin organization and transcription

FEBS Open Bio, EarlyView.
RoboMic is an automated confocal microscopy pipeline for high‐throughput functional imaging in living cells. Demonstrated with fluorescence recovery after photobleaching (FRAP), it integrates AI‐driven nuclear segmentation, ROI selection, bleaching, and analysis.
Selçuk Yavuz, Bart Geverts, Johan A. Slotman, Andrea Sacchetti, Stefan Prekovic, Martin E. van Royen, Adriaan B. Houtsmuller   +6 more
wiley   +1 more source

PAP: PHANGS-ALMA pipeline

, 2021
The PHANGS-ALMA pipeline process data from radio interferometer observations. It uses CASA (ascl:1107.013), AstroPy (ascl:1304.002), and other affiliated packages to process data from calibrated visibilities to science-ready spectral cubes and maps.
Wilson, Christine D., Sanchez-Blazquez, Patricia, Dale, Daniel A., Santoro, Francesco, Thilker, David A., Groves, Brent, Querejeta, Miguel, Cao, Yixian, García-Rodríguez, Alex, Leroy, Adam K., Bigiel, Frank, Mok, Angus, Barnes, Ashley, Blanc, Guillermo A., Rosolowsky, Erik, Watkins, Elizabeth J., Schruba, Andreas, Boquien, Mederic, Scheuermann, Fabian, Sardone, Amy, Hygate, Alexander P. S., Glover, Simon C. O., Sun, J., Hughes, Annie, Chevance, Melanie, Grasha, Kathryn, Belfiore, Francesco, Henshaw, Jonathan D., Kreckel, Kathryn, Koch, Eric W., Lee, J.C., Beslic, Ivana, Chiang, I-Da, Kepley, Amanda A., Ubeda, Leonardo, McElroy, Rebecca, Sliwa, Kazimierz, Utomo, Dyas, Anand, Gagandeep S, Congiu, Enrico, Faesi, Christopher M., den Brok, Jakob S., Sandstrom, Karin M., Deger, Sinan, Chandar, Rupali, Pety, Jerome, Usero, Antonio, Chastenet, Jeremy, Kim, Jenny J., Pan, Hsi-An, Klessen, Ralf S., Mayker, Ness, Will, David, Puschnig, Johannes, Schinnerer, Eva, Razza, Alessandro, Saito, Toshiki, Kruijssen, J. M. Diederik, Jimenez Donaire, Maria J., Liu, Daizhong, Bolatto, Alberto D., Larson, Kirsten L., Emsellem, E., Turner, Jordan A., Eibensteiner, Cosima, Herrera, Cinthya N., Meidt, Sharon E.   +66 more
core  

Flowchart showing the pipeline steps with required software.

, 2023
Flowchart showing the pipeline steps with required software.
Daniel J. Soper (16510502), Dustine Reich (16510505), Pariya Salami (16510508), Alex Ross (4069711), Noam Peled (8825729), Angelique C. Paulk (7162235), Sydney S. Cash (7162259), Ishita Basu (6196979)   +7 more
core   +1 more source

Single‐molecule DNA flow‐stretch assays for high‐throughput DNA–protein interaction studies

FEBS Open Bio, EarlyView.
We describe an optimised single‐molecule DNA flow‐stretch assay that visualises DNA–protein interactions in real time. Linear DNA fragments are tethered to a surface and stretched by buffer flow for fluorescence imaging. Using λ and φX174 DNA, this protocol enhances reproducibility and accessibility, providing a versatile approach for studying diverse ...
Ayush Kumar Ganguli, Mohammad Nour Alsamsam, Ugnė Bagdonaitė, Van Truc Vu, Chun‐Jen Huang, Polina Kuzhir, Mindaugas Zaremba, Aurimas Kopūstas, Marijonas Tutkus   +8 more
wiley   +1 more source

Development status and countermeasures of quantitative risk assessment technology for oil & gas pipeline

You-qi chuyun, 2020
Pipeline risk assessment is the key process of pipeline integrity management. With the continuous improvementof refinement requirements for pipeline integrity management, pipeline risk assessment also transfers from semi-quantitativeassessment to ...
Xin WANG, Jianping LIU, Qiang ZHANG, Lilei JING, Ningfeng WANG, Lei TIAN, Yihua ZHAO, Bozhao ZHANG   +7 more
doaj   +1 more source

Optimizing photoactivation of PA‐mCherry for optical pooled CRISPR screens

FEBS Open Bio, EarlyView.
Photoactivatable PA‐mCherry finds widespread use to optically tag individual cells. However, confocal 405 nm UV laser‐scanning (normal scan) is much less efficient than widefield UV illumination, limiting the use of PA‐mCherry on confocal instruments. We remedy this limitation by reporting that rapid and repeated confocal scanning with a low‐intensity,
Sravasti Mukherjee, Giulia Zanetti, Bram van den Broek, Kees Jalink   +3 more
wiley   +1 more source

Dynamic Behavior of the Deepwater Flexible Pipeline during Pipe Laying Process

Journal of Marine Science and Engineering, 2020
The dynamic behavior of the flexible pipeline during deepwater Flex-lay directly determines the structures of laying facilities and the actual installation process.
Liquan Wang, Ming Ju, Xiaodong Xing, Feihong Yun, Xiangyu Wang   +4 more
doaj   +1 more source