Results 41 to 50 of about 8,559 (84)

Microbiomes and Planctomycete diversity in large-scale aquaria habitats

PLOS ONE, 2022
In commercial large-scale aquaria, controlling levels of nitrogenous compounds is essential for macrofauna health. Naturally occurring bacteria are capable of transforming toxic nitrogen species into their more benign counterparts and play important roles in maintaining aquaria health.
Claire E. Elbon, Gary R. LeCleir, Matthew J. Tuttle, Sophie K. Jurgensen, Thomas G. Demas, Christian J. Keller, Tina Stewart, Alison Buchan   +7 more
openaire   +4 more sources

Genome sequence of Victivallis vadensis ATCC BAA-548, an anaerobic bacterium from the phylum Lentisphaerae, isolated from the human gastrointestinal tract [PDF]

, 2011
Victivallis vadensis ATCC BAA-548 represents the first cultured representative from the novel phylum Lentisphaerae, a deep-branching bacterial lineage. Few cultured bacteria from this phylum are known, and V.
Mark W. J. van Passel, Ravi Kant, Airi Palva, Susan Lucas, Alex Copeland, Alla Lapidus, Tijana Glavina del Rio, Eileen Dalin, Hope Tice, David Bruce, Lynne Goodwin, Sam Pitluck, Karen Walston Davenport, David Sims, Thomas S. Brettin, John C. Detter, Shunsheng Han, Frank W. Larimer, Miriam L. Land, Loren Hauser, Nikolaos Kyrpides, Galina Ovchinnikova, P. Paul Richardson, Willem M. de Vos, Hauke Smidt, Erwin G. Zoetendal   +25 more
core   +1 more source

Specificities and commonalities of the Planctomycetes plasmidome

Environmental Microbiology
ABSTRACTAlthough plasmids play a crucial role in antibiotic resistance and contemporary biotechnology, our comprehension of their natural ecological dynamics remains restricted to a few bacterial groups. Planctomycetes is a bacterial phylum with unusual molecular and cellular biology for which little is known about its plasmidome.
María del Mar Quiñonero‐Coronel, Damien Paul Devos, M. Pilar Garcillán‐Barcia   +2 more
openaire   +4 more sources

Topological data analysis of Escherichia coli O157:H7 and non-O157 survival in soils. [PDF]

, 2014
Shiga toxin-producing E. coli O157:H7 and non-O157 have been implicated in many foodborne illnesses caused by the consumption of contaminated fresh produce.
Crowley, David E, Ibekwe, Abasiofiok M, Johnson, Alexis M, Lum, Pek Y, Ma, Jincai, Petrossian, Tanya C, Yang, Ching-Hong   +6 more
core   +2 more sources

Unravelling the active microbial community in a thermophilic anaerobic digester-microbial electrolysis cell coupled system under different conditions [PDF]

, 2017
Thermophilic anaerobic digestion (AD) of pig slurry coupled to a microbial electrolysis cell (MEC) with a recirculation loop was studied at lab-scale as a strategy to increase AD stability when submitted to organic and nitrogen overloads.
Bonmatí Blasi, August, Cerrillo Moreno, Míriam, Viñas Canals, Marc   +2 more
core   +2 more sources

Epiphytic bacterial community composition on two common submerged macrophytes in brackish water and freshwater [PDF]

, 2008
Background Plants and their heterotrophic bacterial biofilm communities possibly strongly interact, especially in aquatic systems. We aimed to ascertain whether different macrophytes or their habitats determine bacterial community composition.
Blindow Irmgard, Blume Maja, Hempel Melanie, Gross Elisabeth M   +3 more
core   +1 more source

Complete genome sequence of Isosphaera pallida type strain (IS1B). [PDF]

, 2011
Isosphaera pallida (ex Woronichin 1927) Giovannoni et al. 1995 is the type species of the genus Isosphaera. The species is of interest because it was the first heterotrophic bacterium known to be phototactic, and it occupies an isolated phylogenetic ...
Beck, Brian, Bristow, James, Chang, Yun-Juan, Chen, Amy, Cheng, Jan-Fang, Cleland, David, Deshpande, Shweta, Detter, John C, Eisen, Jonathan A, Goodwin, Lynne, Göker, Markus, Hammon, Nancy, Han, Cliff, Hauser, Loren, Hugenholtz, Philip, Ivanova, Natalia, Jeffries, Cynthia D, Klenk, Hans-Peter, Kyrpides, Nikos C, Land, Miriam, Lapidus, Alla, Liolios, Konstantinos, Lucas, Susan, Markowitz, Victor, Mavromatis, Konstantinos, Nolan, Matt, Pagani, Ioanna, Palaniappan, Krishna, Pati, Amrita, Pitluck, Sam, Saunders, Elizabeth, Tapia, Roxane, Woyke, Tanja   +32 more
core  

Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines [PDF]

, 2016
Funding Information: This research received financial support from the Bill and Melinda Gates Foundation (grant number OPP52641). AWW and JP were supported by the Wellcome Trust [grant number 098051]. AWW and the Rowett Institute of Nutrition and Health,
Abdelahi, Faraji, Ensink, Jeroen H. J., Gibson, Walter, Gundogdu, Ozan, Ijaz, Umer Zeeshan, Nguyen, Viet-Anh, Parkhill, Julian, Quince, Christopher, Sudgen, Steven, Torondel, Belen, Walker, Alan W.   +10 more
core   +4 more sources

Unbiased taxonomic annotation of metagenomic samples [PDF]

, 2018
The classification of reads from a metagenomic sample using a reference taxonomy is usually based on first mapping the reads to the reference sequences and then classifying each read at a node under the lowest common ancestor of the candidate sequences ...
Bruno Fosso, Cormen T.H., Fosso B., Francesc Rosselló, Gabriel Valiente, Garey M.R., Graziano Pesole, Gurobi Optimization, Inc., Huson D., Jaccard P., Navas-Molina J.A., Powers D.M.W., Thomas T., Wooley J.C.   +13 more
core   +2 more sources

Structure, composition and metagenomic profile of soil microbiomes associated to agricultural land use and tillage systems in the Argentine Pampas [PDF]

, 2014
Agriculture is facing a major challenge nowadays: to increase crop production for food and energy while preserving ecosystem functioning and soil quality.
Alvarez, Roberto, Carbonetto, María Belén, Mentaberry, Alejandro Nestor, Rascovan, Nicolas, Vazquez, Martin Pablo   +4 more
core   +1 more source