Results 11 to 20 of about 41,555 (197)

RepPop: a database for repetitive elements in Populus trichocarpa [PDF]

BMC Genomics, 2009
Background Populus trichocarpa is the first tree genome to be completed, and its whole genome is currently being assembled. No functional annotation about the repetitive elements in the Populus trichocarpa genome is currently available.
Xu Ying, Zhou Fengfeng
doaj   +12 more sources

Culturable Seed Microbiota of Populus trichocarpa [PDF]

Pathogens, 2021
Plants harbor a diverse community of microbes, whose interactions with their host and each other can influence plant health and fitness. While microbiota in plant vegetative tissues has been extensively studied, less is known about members of the seed ...
Sabrina Heitmann, Gillian E. Bergmann, Edward Barge, Mary Ridout, George Newcombe, Posy E. Busby   +5 more
doaj   +4 more sources

The nitrilase PtNIT1 catabolizes herbivore-induced nitriles in Populus trichocarpa [PDF]

BMC Plant Biology, 2018
Background Nitrilases are nitrile-converting enzymes commonly found within the plant kingdom that play diverse roles in nitrile detoxification, nitrogen recycling, and phytohormone biosynthesis.
Jan Günther, Sandra Irmisch, Nathalie D. Lackus, Michael Reichelt, Jonathan Gershenzon, Tobias G. Köllner   +5 more
doaj   +7 more sources

Evolutionary Quantitative Genomics of Populus trichocarpa. [PDF]

PLoS ONE, 2015
Forest trees generally show high levels of local adaptation and efforts focusing on understanding adaptation to climate will be crucial for species survival and management.
Ilga Porth, Jaroslav Klápště, Athena D McKown, Jonathan La Mantia, Robert D Guy, Pär K Ingvarsson, Richard Hamelin, Shawn D Mansfield, Jürgen Ehlting, Carl J Douglas, Yousry A El-Kassaby   +10 more
doaj   +5 more sources

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) [PDF]

Science, 2006
We report the draft genome of the black cottonwood tree, Populus trichocarpa. Integration of shotgun sequence assembly with genetic mapping enabled chromosome-scale reconstruction of the genome.
MONTANINI, Barbara, Martin,F., J. Schmutz, Gendler, K., Montanini, B., Razumovskaya, J., Segerman, Bo, Heinze, B., Schein, J., Hellsten, U, Henrissat, B., Degroeve, Sven, Jansson, S., Bhalerao, R.R., Hellsten, U., Holt, R., Nelson, D R, G. L. Chen, Rinaldi, C., Unneberg, P., Chen, G.-L., B. Henrissat, Boerjan, Wout, J. Ehlting, N. Islam Faridi, L. Gunter, Bhalerao, Rupali R,, Brunner, A., M. Gribskov, Rouzé, P, Tuskan, G A, Chapman, J., Rombauts, Stephane, J. Couturier, Nilsson, O., Rouze, P., Rombauts, S, A. Aerts, Dejardin, A., S. Ralph, Douglas, C, D. Holligan, Campbell, M, C. Rinaldi, Blaudez, D., G. Sandberg, D. Rokhsar, Dirks, B, Jorgensen, R, Rokhsar, D, C. Napoli, Kohler, A., dePamphilis, C, Kirkpatrick, R, Cooper, D., Segerman, B., Davis, J., B. Hamberger, Bhalerao, R.P., R. Holt, dePamphillis, C., R. Jorgensen, Couturier, J, Yin, T., Jones-Rhoades, M., B. Dirks, P. Locascio, Bohlmann, J, R. Cunningham, Holt, R, S. Degroeve, W. Boerjan, A. Poliakov, Philippe, R., Yang, G., Gribskov, M, Wessler, S, Kalluri, U., Busov, V, Shin, H., Nelson, C, Davis, J, Detter, J., Pereda, V, S. Difazio, U. Kalluri, H. Shin, A. Siddiqui, Bohlmann, J., Kangasjarvi, J., Ralph, S, F. Larimer, Goodstein, D, Montanini, B, Van der Peer, Y., M. Jones Rhoades, V. Pereda, J. Razumovskaya, Chalot, M., C. Depamphilis, Putnam, N., J. Chapman, J. Davis, Heinze, B, Terry, A., Coutinho,P.M., Aerts, A, D. Blaudez, Philippe, R, Carlson, J, R. R. Bhalerao, E. Uberbacher, Couturier, J., R. Philippe, Shin, H, Ralph, S., J. Leebens Mack, P. Unneberg, Helariutta, Y., J. Vahala, Y. Van de Peer, Yin, T, Sterck, L., Hamberger, B., S. Duplessis, Helariutta, Y, Kohler, A, Marra, M, Uberbacher, E., J. Kangasjarvi, A. Terry, Karlsson, J, Nilsson, O, Kalluri, U, Karlsson, Jan,, Nieminen, K., Douglas, C., S. Rombauts, Schrader, J, Wall, K, Duplessis, S, Gendler, K, Joshi, C, Leple, J.-C., J. Schrader, Gribskov, M., Chalot, M, Groover, A, O. Nilsson, M. Chalot, Islam-Faridi, N, Tuskan, G. A., J. Bohlmann, G. Yang, Lucas, S, Cronk, Q, Cronk, Q., Duplessis, S., Karlsson, J., Schein, J, Huang, W, Ryaboy, D., Kelleher, C, M. Campbell, K. Gendler, Lou, Y, DiFazio, S, Grimwood, J, Larimer, F, Tsai, C., Sterck, L, B. Segerman, Rombauts, S., Kelleher, C., Ehiting, J., Grigoriev,I., Salamov, A., Covert, S, Siddiqui, A, Nelson, D., S. Lucas, D. Ryaboy, Lucas, S., N. Putnam, Sandberg, Göran,, Jansson, S, Coutinho, P M, Degroeve, S, Peter, G, G. Pilate, C. J. Tsai, R. P. Bhalerao, Locascio, P, Rinaldi, C, Yang, G, Holligan, D, Déjardin, A, Siddiqui,A., J. Detter, U. Hellsten, J. Grimwood, Brun, A, Tsai, C-J, Boerjan, W, G. A. Tuskan, Nelson, DR, Kirst, M., Poliakov, A., Ehlting, J, Busov, V., Nelson, D.R., J. Karlsson, Hamberger, B, Pilate, G., P. Rouze, Gunter, L, D. R. Nelson, C. Joshi, J. C. Leple, Henrissat, B, Gunter, L., Sandberg, G, A. Brunner, I. Dubchak, D. Goodstein, Vahala, J, I. Grigoriev, Pilate, G, Detter, J, Joshi, C., Sterky, F, Van de Peer, Yves, Goodstein, D., S. Jansson, W. Huang, Sandberg, G., Chen, G-L, A. Kohler, A. Groover, Marra,M., Brun, A., S. Covert, G. Peter, Segerman, B, K. Nieminen, Kirst, M, Jones, S., Groover, A., Leplé, J-C, B. Heinze, D. Cooper, Nilsson, Ove,, Islam-Faridi, N., Ellis, B, Degroeve, S., Peter, G., Covert, S., Ritland, K, Schrader, J., Poliakov, A, C. Nelson, Putnam, N, DiFazio, S., Rokhsar, D., Nieminen, K, Cooper, D, Schmutz, J, P. Richardson, K. Wall, Ryaboy, D, Sterky, F., Uberbacher, E, F. Sterky, B. Ellis, P. M. Coutinho, Napoli, C., Dubchak, I., Q. Cronk, J. Schein, Jones, S, Martin, F, Schmutz, J., Napoli, C, M. Marra, Vahala, J., L. Sterck, Salamov, A, T. Yin, Grigoriev, I, Y. Helariutta, Bhalerao, RR, Razumovskaya, J, Tuskan, GA, Cunningham, R., Kirkpatrick, R., Brunner, A, Larimer, F., Coutinho, PM, Bhalerao, RP, Ellis, B., Jansson, Stefan,, Chapman, J, Campbell, M., Bhalerao, Rishikesh P,, Dubchak, I, Holligan, D., S. Jones, M. Kirst, Richardson, P., J. Carlson, Wall, K., Aerts, A., Van de Peer, Y, Sterky, Fredrik, Boerjan, W., Dirks, B., R. Kirkpatrick, Locascio, P., Jones-Rhoades, M, S. Wessler, A. Dejardin, V. Busov, Carlson, J., Lou, Y., Wessler, S., Rouzé, Pierre, Sterck, Lieven, Unneberg, P, A. Salamov, Cunningham, R, Huang, W., Kangasjärvi, J, Richardson, P, Grimwood, J., Leebens-Mack, J., A. Brun, C. Kelleher, Blaudez, D, Y. Lou, C. Douglas, Ritland, K., F. Martin, Terry, A, Leebens-Mack, J, Jorgensen, R., K. Ritland   +345 more
core   +9 more sources

Local adaptation in Populus trichocarpa

, 2020
This study includes genotypic, phenotypic and environmental data for 869 unrelated Populus trichocarpa (black cottonwood) trees that have a natural distribution range in the western United States (northern California to Northern British Columbia).
Gerald Tuskan (471216), Gancho Slavov (3258846), Stephen DiFazio (3258843), Nesatalu Hiese (8707678), David Macaya-Sanz (3197625), Hari Chhetri (8707677)   +5 more
core   +2 more sources

Deep annotation of Populus trichocarpa microRNAs from diverse tissue sets. [PDF]

PLoS ONE, 2012
Populus trichocarpa is an important woody model organism whose entire genome has been sequenced. This resource has facilitated the annotation of microRNAs (miRNAs), which are short non-coding RNAs with critical regulatory functions.
Joshua R Puzey, Amir Karger, Michael Axtell, Elena M Kramer   +3 more
doaj   +3 more sources

A survey of LTR-retrotransposons in the Populus trichocarpa genome

, 2009
A survey of LTR-retrotransposons in the Populus trichocarpa ...
GIORDANI, TOMMASO, NATALI, LUCIA, CAVALLINI, ANDREA, M. BUTI, COSSU, ROSA MARIA, Cavallini, A., Natali, L., Cossu, R. M., Giordani, T., BUTI, MATTEO   +9 more
core   +4 more sources

Towards an official gene nomenclature for Populus trichocarpa. [PDF]

Tree Physiol
Abstract The HUGO Gene Nomenclature Committee (www.genenames.org), which has been naming human genes for over 40 years, has been tasked with establishing an official gene nomenclature system for the black cottonwood tree Populus trichocarpa (Torr. & Gray).
Tweedie S, Martin S, Bruford E.
europepmc   +5 more sources

Innovation and Emerging Roles of Populus trichocarpa TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR Transcription Factors in Abiotic Stresses by Whole-Genome Duplication

Frontiers in Plant Science, 2022
The TEOSINTE BRANCHED1/CYCLOIDEA/PROLIFERATING CELL FACTOR (TCP) family proteins are plant-specific transcription factors that have been well-acknowledged for designing the architectures of plant branch, shoot, and inflorescence.
Shuo Wang, Yirong Shen, Liangyu Guo, Lingling Tan, Xiaoxue Ye, Yanmei Yang, Xijuan Zhao, Yuqi Nie, Deyin Deng, Shenkui Liu, Wenwu Wu   +10 more
doaj   +1 more source