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Protein Sequence Databases

2009
Protein sequence databases do not contain just the sequence of the protein itself but also annotation that reflects our knowledge of its function and contributing residues. In this chapter, we will discuss various public protein sequence databases, with a focus on those that are generally applicable.
openaire   +4 more sources

The Protein Ensemble Database

2015
The scientific community's major conceptual notion of structural biology has recently shifted in emphasis from the classical structure-function paradigm due to the emergence of intrinsically disordered proteins (IDPs). As opposed to their folded cousins, these proteins are defined by the lack of a stable 3D fold and a high degree of inherent structural
VÁRADI, Mihály, Tompa, Peter
openaire   +3 more sources

The STRING database in 2025: protein networks with directionality of regulation

Nucleic Acids Research
Proteins cooperate, regulate and bind each other to achieve their functions. Understanding the complex network of their interactions is essential for a systems-level description of cellular processes.
Damian Szklarczyk   +14 more
semanticscholar   +1 more source

Developing Well-Annotated Species-Specific Protein Databases Using Comparative Proteogenomics.

Advances in Experimental Medicine and Biology, 2019
Emmalyn J. Dupree   +3 more
semanticscholar   +1 more source

Two Blast-independent tools, CyPerl and CyExcel, for harvesting hundreds of novel cyclotides and analogues from plant genomes and protein databases

Planta, 2014
Jun Zhang   +8 more
semanticscholar   +1 more source

The contemporary management of cancers of the sinonasal tract in adults

Ca-A Cancer Journal for Clinicians, 2023
Rajat Thawani
exaly  

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases.

TIBS -Trends in Biochemical Sciences. Regular ed, 1998
S. F. Altschul, E. Koonin
semanticscholar   +1 more source

Highly accurate protein structure prediction with AlphaFold

Nature, 2021
John M Jumper   +2 more
exaly  

The protein corona from nanomedicine to environmental science

Nature Reviews Materials, 2023
Assist Prof Morteza Mahmoudi   +2 more
exaly  

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