Results 121 to 130 of about 10,190 (249)

Proteogenomics: concepts, applications and computational strategies [PDF]

Nature Methods, 2014
Proteogenomics is an area of research at the interface of proteomics and genomics. In this approach, customized protein sequence databases generated using genomic and transcriptomic information are used to help identify novel peptides (not present in reference protein sequence databases) from mass spectrometry-based proteomic data; in turn, the ...
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Data from Exploring the Immunogenicity of Noncanonical HLA-I Tumor Ligands Identified through Proteogenomics

, 2023
Maria Lozano-Rabella, Andrea García-Garijo, Jara Palomero, Anna Yuste-Estevanez, Florian Erhard, Roc Farriol-Duran, Juan Martín-Liberal, María Ochoa-de-Olza, Ignacio Matos, Jared J. Gartner, Michael Ghosh, Francesc Canals, August Vidal, Josep M. Piulats, Xavier Matías‐Guiu, Irene Braña, Eva Muñoz‐Couselo, Elena Garralda, Andreas Schlösser, Alena Gros   +19 more
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607. Integration of LC MALDI- TOF/TOF Mass Spectrometry To Provide Proteogenomic Information for the Manufacture of Patient Specific Cancer Therapies [PDF]

, 2008

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Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics

, 2022
Madison Mehlferber, Erin D. Jeffery, Jamie Saquing, Ben T. Jordan, Leon Sheynkman, Mayank Murali, Gaël Genet, Bipul R. Acharya, Karen K. Hirschi, Gloria Sheynkman   +9 more
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Protein sensing and discrimination using highly functionalised ruthenium( ii ) tris(bipyridyl) protein surface mimetics in an array format

, 2017
Ruthenium(II) tris(bipyridyl) protein surface mimetics are used in an array format to sense and discriminate proteins including therapeutically relevant targets, hDM2 and MCL-1, using linear discriminant analysis (LDA)
Hewitt, SH, Wilson, AJ
core   +1 more source

Spleen-based proteogenomics reveals that Escherichia coli infection induces activation of phagosome maturation pathway in chicken

, 2023
Jiahui Shi, Songhao Jiang, Qiang Wang, Jilin Dong, Huiming Zhu, Peijia Wang, Shuhong Meng, Zhenpeng Zhang, Lei Chang, Guibin Wang, Xiaoqin Xu, Ping Xu, Yao Zhang   +12 more
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FIGURE 4 from Proteogenomic Approaches for the Identification of NF1/Neurofibromin-depleted Estrogen Receptor–positive Breast Cancers for Targeted Treatment

, 2023
Beom-Jun Kim, Ze‐Yi Zheng, Jonathan T. Lei, Matthew V. Holt, Anran Chen, Jianheng Peng, Diana Fandino, Purba Singh, Hilda Kennedy, Yongchao Dou, María del Rosario Chica-Parrado, Emmanuel Bikorimana, Dan Ye, Yunguan Wang, Ariella B. Hanker, Nada Mohamed, Susan G. Hilsenbeck, Bora Lim, Jaya Ruth Asirvatham, Arun Sreekumar, Bing Zhang, George Miles, Meenakshi Anurag, Matthew J. Ellis, Eric C. Chang   +24 more
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Microscaled Proteogenomic Methods for Precision Oncology [PDF]

, 2019
Shankha Satpathy, Eric J. Jaehnig, Karsten Krug, Beom‐Jun Kim, Alexander B. Saltzman, Doug W. Chan, Kimberly R. Holloway, Meenakshi Anurag, Chen Huang, Purba Singh, Ari Gao, Noel Namai, Yongchao Dou, Bo Wen, Suhas Vasaikar, David G. Mutch, Mark A. Watson, X. Cynthia, Foluso O. Ademuyiwa, Mothaffar F. Rimawi, Jeremy Hoog, Samuel A. Jacobs, Anna Malovannaya, Terry Hyslop, Karl R. Clauser, D.R. Mani, Charles M. Perou, George Miles, Bing Zhang, Michael A. Gillette, Steven A. Carr, Matthew J. Ellis   +31 more
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Proteogenomic data and resources for pan-cancer analysis [PDF]

, 2023
Yize Li, Yongchao Dou, Felipe da Veiga Leprevost, Yifat Geffen, Anna Calinawan, François Aguet, Yo Akiyama, Shankara Anand, Chet Birger, Song Cao, Rubina Chaudhary, Padmini Chilappagari, Marcin Cieślik, Antonio Colaprico, Daniel Cui Zhou, Corbin Day, Marcin J. Domagalski, Myvizhi Esai Selvan, David Fenyö, Steven M. Foltz, Alicia Francis, Tania J González-Robles, Zeynep H. Gümüş, David I. Heiman, Michael Holck, Runyu Hong, Yingwei Hu, Eric J. Jaehnig, Jiayi Ji, Wen Jiang, Lizabeth Katsnelson, Karen A. Ketchum, Robert J. Klein, Jonathan T. Lei, Wen-Wei Liang, Yuxing Liao, Caleb M. Lindgren, Weiping Ma, Lei Ma, Michael J. MacCoss, Fernanda Martins Rodrigues, Wilson McKerrow, Ngoc B. Nguyen, Robert Oldroyd, Alexander Pilozzi, Pietro Pugliese, Boris Reva, Paul A. Rudnick, Kelly V. Ruggles, Dmitry Rykunov, Sara R. Savage, Michael Schnaubelt, Tobias Schraink, Zhiao Shi, Deepak Singhal, Xiaoyu Song, Erik Storrs, Nadezhda V. Terekhanova, Ratna R. Thangudu, Mathangi Thiagarajan, Liang-Bo Wang, Joshua M. Wang, Ying Wang, Bo Wen, Yige Wu, Matthew A. Wyczalkowski, Xin Yi, Lijun Yao, Xinpei Yi, Hui Zhang, Qing Zhang, Maya Zuhl, Gad Getz, Li Ding, Alexey I. Nesvizhskii, Pei Wang, Ana I. Robles, Bing Zhang, Samuel Payne, Alexander J. Lazar, Amanda G. Paulovich, Antonio Colaprico, Antonio Iavarone, Arul M. Chinnaiyan, Brian Druker, Chandan Kumar‐Sinha, Chelsea J. Newton, Chen Huang, D.R. Mani, Richard Smith, Emily M. Huntsman, Eric E. Schadt, Eunkyung An, Francesca Petralia, Galen Hostetter, Gilbert S. Omenn, Hanbyul Cho, Henry Rodriguez, Hui Zhang, Iga Kołodziejczak   +99 more
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39 Interim analysis of ovarian cancer by the us national cancer moonshot’s tri-federal (DOD/NCI/VA) applied proteogenomic organizational learning and outcomes (APOLLO) research network [PDF]

, 2019
GL Maxwell, NW Bateman, A. R. Soltis, G Wang, CL Dalgard, EF Petricoin, CM Tarney, C. Rojas, Laura J. Havrilesky, D. E. Cohn, JM Wells, Hai Hu, CA Hamilton, CD Shriver, Matthew D. Wilkerson, Yovanni Casablanca, Kathleen M. Darcy, T P Conrads   +17 more
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