Results 141 to 150 of about 14,834 (261)
In eukaryotes, the highly conserved U3 small nucleolar RNA (snoRNA) base-pairs to multiple sites in the pre-ribosomal RNA (pre-rRNA) to promote early cleavage and folding events.
Richa Sardana +9 more
semanticscholar +1 more source
antaRNA – Multi-objective inverse folding of pseudoknot RNA using ant-colony optimization
Many functional RNA molecules fold into pseudoknot structures, which are often essential for the formation of an RNA’s 3D structure. Currently the design of RNA molecules, which fold into a specific structure (known as RNA inverse folding) within ...
Robert Kleinkauf +3 more
semanticscholar +1 more source
ENTRNA: a framework to predict RNA foldability
Background RNA molecules play many crucial roles in living systems. The spatial complexity that exists in RNA structures determines their cellular functions.
Congzhe Su +4 more
doaj +1 more source
Background RNA pseudoknot structures play an important role in biological processes. However, existing RNA secondary structure prediction algorithms cannot predict the pseudoknot structure efficiently.
Zhang Kai +4 more
doaj +1 more source
Free Energy Landscape and Multiple Folding Pathways of an H-Type RNA Pseudoknot
How RNA sequences fold to specific tertiary structures is one of the key problems for understanding their dynamics and functions. Here, we study the folding process of an H-type RNA pseudoknot by performing a large-scale all-atom MD simulation and bias ...
Yunqiang Bian +4 more
semanticscholar +1 more source
Nanopore electric snapshots of an RNA tertiary folding pathway
While RNA folding is critical for its function, study of this process is challenging. Here, the authors combine nanopore single-molecule manipulation with theoretical analysis to follow the folding of an RNA pseudoknot, monitoring the intermediate states
Xinyue Zhang +9 more
doaj +1 more source
Contributions of Pseudoknots and Protein SmpB to the Structure and Function of tmRNA in trans-Translation [PDF]
Iwona K. Wower +2 more
openalex +1 more source
Predicting 3D structures and stabilities for complex RNA pseudoknots in ion solutions [PDF]
Xunxun Wang +4 more
openalex +1 more source
Prediction of RNA pseudoknots using heuristic modeling with mapping and sequential folding.
Predicting RNA secondary structure is often the first step to determining the structure of RNA. Prediction approaches have historically avoided searching for pseudoknots because of the extreme combinatorial and time complexity of the problem.
Wayne K Dawson +2 more
doaj +1 more source
RNA Pseudoknots Obtained by Means of Knowledge-Based Interaction Potentials [PDF]
Mauricio D. Carbajal‐Tinoco
openalex +1 more source

