Results 141 to 150 of about 14,400 (274)
RNA structure prediction: progress and perspective
, 2014 Many recent exciting discoveries have revealed the versatility of RNAs and their importance in a variety of cellular functions which are strongly coupled to RNA structures.
Shi, Ya-Zhou +3 more
core +1 more source
Mimicking Ribosomal Unfolding of RNA Pseudoknot in a Protein Channel.
Journal of the American Chemical Society, 2015 Pseudoknots are a fundamental RNA tertiary structure with important roles in regulation of mRNA translation. Molecular force spectroscopic approaches such as optical tweezers can track the pseudoknot's unfolding intermediate states by pulling the RNA ...
Xinyue Zhang +6 more
semanticscholar +1 more source
Cell Reports, 2017 Tumor necrosis factor alpha (TNF-α) is expressed promptly during inflammatory responses. Efficient TNF-α mRNA splicing is achieved through a 3′ UTR element that activates RNA-dependent eIF2α protein kinase (PKR).
Lise Sarah Namer +5 more
doaj +1 more source
Wearable Electrochemical Biosensors for Advanced Healthcare Monitoring
Advanced Science, Volume 12, Issue 2, January 13, 2025.Bioreceptor‐based wearable electrochemical sensors have opened new avenues for on‐body and continuous molecular detections, enabling personalized and preventive healthcare. This review summarises recent innovations and applications of those wearable biosensing systems in detecting a variety of biochemical markers, such as small molecules, hormones ...
Haowei Duan +6 more
wiley +1 more source
An Algorithm for RNA Pseudoknots
, 2003 21 pages, 14 ...
Pillsbury, M. +3 more
openaire +2 more sources
Nucleic Acids Research, 2017 Massive all-atom molecular dynamics simulations were conducted across a distributed computing network to study the folding, unfolding, misfolding and conformational plasticity of the high-efficiency frameshifting double mutant of the 26 nt potato leaf ...
Khai K. Q. Nguyen +7 more
semanticscholar +1 more source
Shapes of topological RNA structures [PDF]
, 2014 A topological RNA structure is derived from a diagram and its shape is obtained by collapsing the stacks of the structure into single arcs and by removing any arcs of length one. Shapes contain key topological, information and for fixed topological genus
Christian M. Reidys, Fenix W. D, Huang
core
On pseudoknot-bordered words and their properties
Journal of Computer and System Sciences, 2009 AbstractWe study a generalization of the classical notions of bordered and unbordered words, motivated by biomolecular computing. DNA strands can be viewed as finite strings over the alphabet {A, G, C, T}, and are used in biomolecular computing to encode information.
Shinnosuke Seki, Lila Kari
openaire +2 more sources
A dynamic programming algorithm for RNA structure prediction including pseudoknots [PDF]
arXiv, 1998 We describe a dynamic programming algorithm for predicting optimal RNA secondary structure, including pseudoknots. The algorithm has a worst case complexity of ${\cal O}(N^6)$ in time and ${\cal O}(N^4)$ in storage. The description of the algorithm is complex, which led us to adopt a useful graphical representation (Feynman diagrams) borrowed from ...
arxiv
Tree decomposition and parameterized algorithms for RNA structure-sequence alignment including tertiary interactions and pseudoknots [PDF]
, 2012 We present a general setting for structure-sequence comparison in a large class of RNA structures that unifies and generalizes a number of recent works on specific families on structures.
Barth, Dominique +3 more
core +3 more sources