Results 151 to 160 of about 14,834 (261)

A bijection between unicellular and bicellular maps [PDF]

, 2013
In this paper we present a combinatorial proof of a relation between the generating functions of unicellular and bicellular maps. This relation is a consequence of the Schwinger-Dyson equation of matrix theory.
Han, Hillary S. W., Reidys, Christian M.
core  

The Functional RNA Identification (FRID) Pipeline: Identification of Potential Pseudoknot-Containing RNA Elements as Therapeutic Targets for SARS-CoV-2 [PDF]

, 2023
Peter C. Forstmeier, McCauley O. Meyer, Philip C. Bevilacqua   +2 more
openalex   +1 more source

Absolute quantification of translational regulation and burden using combined sequencing approaches

Molecular Systems Biology, 2019
Translation of mRNAs into proteins is a key cellular process. Ribosome binding sites and stop codons provide signals to initiate and terminate translation, while stable secondary mRNA structures can induce translational recoding events.
Thomas E Gorochowski, Irina Chelysheva, Mette Eriksen, Priyanka Nair, Steen Pedersen, Zoya Ignatova   +5 more
doaj   +1 more source

Prediction of RNA pseudoknots by Monte Carlo simulations

, 2004
In this paper we consider the problem of RNA folding with pseudoknots. We use a graphical representation in which the secondary structures are described by planar diagrams. Pseudoknots are identified as non-planar diagrams.
Orland, H., Vernizzi, G., Zee, A.
core   +1 more source

Translation Initiation from the Ribosomal A Site or the P Site, Dependent on the Conformation of RNA Pseudoknot I in Dicistrovirus RNAs [PDF]

, 2009
Nobuhiko Kamoshita, Akio Nomoto, Uttam L. RajBhandary   +2 more
openalex   +1 more source

The signed weighted resolution set is not a complete pseudoknot invariant [PDF]

, 2016
Allison Henrich, Slavik Jablan, Inga Johnson   +2 more
openalex   +2 more sources

A functional pseudoknot in 16S ribosomal RNA. [PDF]

, 1991
Ted Powers, Harry F. Noller
openalex   +1 more source

Single-Molecule Electric Snapshots of RNA Tertiary Pseudoknot Folding Pathway [PDF]

, 2017
Xinyue Zhang, Ruicheng Shi, Andrew J. Burcke, Li‐Qun Gu   +3 more
openalex   +1 more source

Conserved RNA Pseudoknots

, 2004
Pseudoknots are essential for the functioning of many small RNA molecules. In addition, viral RNAs often exhibit pseudoknots that are required at various stages of the viral life-cycle. Techniques for detecting evolutionarily conserved, and hence most likely functional RNA pseudoknots, are therefore of interest.
Thurner, Caroline, Hofacker, Ivo L., Stadler, Peter F.   +2 more
openaire   +1 more source

Grammar-Based Computational Framework for Predicting Pseudoknots of K-Type and M-Type in RNA Secondary Structures

Eng
Understanding the structural intricacies of RNA molecules is essential for deciphering numerous biological processes. Traditionally, scientists have relied on experimental methods to gain insights and draw conclusions.
Christos Pavlatos
doaj   +1 more source