Results 41 to 50 of about 14,834 (261)
Canonical RNA Pseudoknot Structures [PDF]
Journal of Computational Biology, 2008 21 pages,7 ...
Ma, Gang, Reidys, Christian M.
openaire +3 more sources
Counting RNA Pseudoknotted Structures [PDF]
Journal of Computational Biology, 2011 In 2004, Condon and coauthors gave a hierarchical classification of exact RNA structure prediction algorithms according to the generality of structure classes that they handle. We complete this classification by adding two recent prediction algorithms. More importantly, we precisely quantify the hierarchy by giving closed or asymptotic formulas for the
Saule, Cédric +3 more
openaire +3 more sources
Comparative Analysis of Novel Strains of Porcine Astrovirus Type 3 in the USA
Viruses, 2021 Porcine astrovirus type 3 (PoAstV3) has been previously identified as a cause of polioencephalomyelitis in swine and continues to cause disease in the US swine industry. Herein, we describe the characterization of both untranslated regions, frameshifting
Franco Matias Ferreyra +12 more
doaj +1 more source
Topology of pseudoknotted homopolymers [PDF]
Physical Review E, 2006 RevTeX 4 pages, 6 figures, minor typos ...
Vernizzi, G. +3 more
openaire +3 more sources
ATTfold: RNA Secondary Structure Prediction With Pseudoknots Based on Attention Mechanism
Frontiers in Genetics, 2020 Accurate RNA secondary structure information is the cornerstone of gene function research and RNA tertiary structure prediction. However, most traditional RNA secondary structure prediction algorithms are based on the dynamic programming (DP) algorithm ...
Yili Wang +14 more
doaj +1 more source
PLoS Computational Biology, 2023 Coronaviruses (CoVs) use -1 programmed ribosomal frameshifting stimulated by RNA pseudoknots in the viral genome to control expression of enzymes essential for replication, making CoV pseudoknots a promising target for anti-coronaviral drugs.
Rohith Vedhthaanth Sekar +2 more
doaj +1 more source
Chelated Magnesium Logic Gate Regulates Riboswitch Pseudoknot Formation.
Journal of Physical Chemistry B, 2021 Magnesium plays a critical role in the structure, dynamics, and function of RNA. The precise microscopic effect of chelated magnesium on RNA structure is yet to be explored.
Raju Sarkar +5 more
semanticscholar +1 more source
PSEUDOKNOTS IN HUMAN SNRNPS [PDF]
International Journal of Bioinformatics Research, 2011 Sayak Ganguli +4 more
openalex +2 more sources
Annexin A2 binds RNA and reduces the frameshifting efficiency of infectious bronchitis virus.
PLoS ONE, 2011 Annexin A2 (ANXA2) is a protein implicated in diverse cellular functions, including exocytosis, DNA synthesis and cell proliferation. It was recently proposed to be involved in RNA metabolism because it was shown to associate with some cellular mRNA ...
Hoyun Kwak, Min Woo Park, Sunjoo Jeong
doaj +1 more source
Abstract P-27: The 30S Ribosomal Subunit Assembly Factor Rbfa Plays a Key Role in the Formation of the Central Pseudoknot and in the Correct Docking of Helix 44 of the Decoding Center [PDF]
International Journal of Biomedicine, 2021 Background: Ribosome biogenesis is a complicated multi-stage process. In the cell, 30S ribosomal subunit assembly is fast and efficient, proceeding with the help of numerous assembly protein factors.
Elena M. Maksimova +7 more
doaj +1 more source