Results 101 to 110 of about 2,785,182 (312)

Raw Reads statistics

, 2022
Statistics of filtered illumina reads and raw ONT-Nanopore reads optained with FastQC (v.0.11.9) and NanoPlot (v.1.32.1), respectively.
Nicola De Bernardini (11494282)
core   +1 more source

GelMA‐based 3D spheroids recapitulate transcriptomic and functional hallmarks of myeloid sarcoma

FEBS Open Bio, EarlyView.
GelMA 5% hydrogels support the formation of myeloid leukemia spheroids that recapitulate MS‐specific features, including G1 arrest, apoptosis, and ECM‐driven transcriptomic reprogramming. The 3D model mimicked soft‐tissue‐like stiffness and oxygen conditions, and transcriptomic convergence with primary MS samples confirmed its utility as a preclinical ...
Nicolas Germain, Elise Buret, Le Hoang Thanh Nguyen, Marion Cocheteux, Nicolas Touya, Mélanie Dhayer, Romain Dubois, Frank Lafont, Sebastien Janel, Patrice Maboudou, Steve Lancel, Philippe Marchetti   +11 more
wiley   +1 more source

Optimal input DNA thresholds for genome skimming in marine crustacean zooplankton [PDF]

PeerJ
Crustacean zooplanktons are key secondary and tertiary producers in marine ecosystems, yet their genomic resources remain poorly understood. To advance biodiversity research on crustacean zooplankton, this study evaluated the effectiveness of genome ...
Junya Hirai
doaj   +2 more sources

Anastrepha suspensa strain:CMAVE lab strain Raw sequence reads

, 2018
Anastrepha suspensa raw sequence reads for preliminary genome ...
USDA-ARS (17854919)
core  

R. leguminosarum whole genome raw sequence reads

, 2016
Paired-end raw sequencing reads from Illumina HiSeq2000 sequencer.
Jennifer A. Lau (2914184), Lau, Jennifer A., Klinger, Christie R., Heath, Katy D., Christie R. Klinger (3256572), Katy D. Heath (146652)   +5 more
core   +1 more source

Identification and characterisation of calcitonin receptor isoforms expressed in glioblastoma derived glioma stem and U‐87 MG cells

FEBS Open Bio, EarlyView.
Glioblastoma cells express calcitonin receptor variants (CT receptor isoforms) that may help them survive stress. Using qPCR, transcript‐specific long‐read nanopore sequencing, immunofluorescence co‐localisation and comparative sequence analysis, this study identifies a novel alternatively spliced CALCR transcript that encodes the CTb receptor isoform ...
Pragya Gupta, Sebastian GB Furness, Tahereh Gharbi, Ric De Paoli‐Iseppi, Shweta S. Joshi, Michael Clark, David L. Hare, Peter Wookey   +7 more
wiley   +1 more source

ddRAD raw sequence reads from Dinacoma caseyi and D. marginata

, 2019
ddRAD raw sequence reads from Dinacoma caseyi and D ...
USDA-ARS (17854919)
core  

Raw sequence reads for Chrysiogenes arsenatis

, 2013
Raw sequencing reads (Illumina 84bp and Sanger ~1000bp) used in the draft genome assembly of Chrysiogenes arsenatis.
David Coil (282388), Jonathan Eisen (97599)   +1 more
core   +1 more source

Using cell‐free RNA to identify B‐ and T‐cell clonality for diagnosis and monitoring of B‐ and T‐cell neoplasms

FEBS Open Bio, EarlyView.
Using peripheral blood for determining B‐cell or T‐cell clonality is more reliable when we use cell‐free RNA (cfRNA) because cells release blood significantly more RNA than DNA. Next‐generation sequencing (NGS) of cfRNA allows us to evaluate fragment cfRNA and evaluate clonality reliably without the need for prior determination of the specific dominant
Adam Albitar, Sally Agersborg, Ahmed Charifa, Pooja Phull, Noa Biran, David Vesole, Harsh Parmar, Andrew Pecora, Andrew Ip, Andre Goy, David Siegel, Maher Albitar   +11 more
wiley   +1 more source

Mapsembler, targeted and micro assembly of large NGS datasets on a desktop computer

BMC Bioinformatics, 2012
Background The analysis of next-generation sequencing data from large genomes is a timely research topic. Sequencers are producing billions of short sequence fragments from newly sequenced organisms. Computational methods for reconstructing whole genomes/
Peterlongo Pierre, Chikhi Rayan
doaj   +1 more source