Results 81 to 90 of about 2,785,182 (312)

Targeted Assembly of Short Sequence Reads [PDF]

, 2011
As next-generation sequence (NGS) production continues to increase, analysis is becoming a significant bottleneck. However, in situations where information is required only for specific sequence variants, it is not necessary to assemble or align whole ...
Rene L. Warren, René L Warren, Robert A Holt, Warren René L., Rene Warren, Holt Robert A., Robert Holt, Robert A. Holt   +7 more
core   +2 more sources

Small RNA pathways in mammalian oocytes

FEBS Open Bio, EarlyView.
Three distinct small RNA pathways operate in mammalian oocytes: RNAi interference (RNAi), the microRNA (miRNA) pathway, and the PIWI‐associated RNA (piRNA) pathway. These pathways use small RNAs to guide sequence‐specific repression and contribute to oocyte biology by targeting genes and mobile elements or appear insignificant since different ...
Petr Svoboda, Josef Pasulka
wiley   +1 more source

Dataset on transcriptomic profiling of parenteral nutrition-induced hepatotoxicity in a human liver in vitro model

Data in Brief
The provided dataset describes the transcriptomic profile of human liver spheroid co-cultures consisting of a human hepatoma cell line (C3A/HepG2 cells) and an immortalized activated human hepatic stellate cell line (LX-2 cells) upon exposure to total ...
Milos Mihajlovic, Mathieu Vinken
doaj   +1 more source

Dendroctonus frontalis Raw sequence reads

, 2018
Dendroctonus frontalis raw sequence reads generated with Ion Torrent Personal Genome Machine Sequencer (ThermoFisher).
USDA Forest Service (14638756)
core  

Adelges piceae strain:11-428 Raw sequence reads

, 2020
Raw sequence reads generated using the Ion Torrent platform for microsatellite enrichment from 50 pooled adult Adelges piceae individuals collected in December 2011 in Fort Bragg ...
USDA Forest Service (14638756)
core  

Raw sequence reads (SRA PRJNA393044)

, 2017
Raw illumina reads in FASTQ format for all samples sequenced in this study.
Prebus, Matthew
core   +1 more source

Field collected D. citri raw illumina reads

, 2022
Raw Illumina reads from seventeen adult Diaphorina citri field-collected from a citrus grove in St. Lucie county, FL. These Illumina sequence reads were used to confirm the presence of entomopathogenic fungal mitochondrial signatures detected in other ...
Steven Higgins (4067527)
core   +1 more source

Transcripts enriched in codons that trigger P‐site tRNA‐mediated mRNA decay possess stable mRNA

FEBS Open Bio, EarlyView.
PTMD codons were first described by Mendel et al. as mediators of an mRNA decay pathway dependent on the human protein CNOT3, homologous to yeast Not5. Our findings confirm that PTMD codons destabilize transcripts; however, unlike in yeast, the human pathway specifically targets and slightly destabilizes primarily stable mRNAs.
Rodolfo Lopes Carneiro, Fernando Lucas Palhano   +1 more
wiley   +1 more source

Zoysia matrella Raw sequence reads

, 2016
RADSeq raw sequence reads from the Zoysia matrella F1 mapping population derived from a cross between cultivars 'Diamond' and 'Cavalier'
Texas A&M AgriLife Research at Dallas (17855660)
core  

Raw sequence reads (SRA PRJNA357470)

, 2017
Raw illumina reads in FASTQ format for all samples sequenced in this study.
Philip S. Ward (3262176), Michael G. Branstetter (7876496), Ward, Philip S., Branstetter, Michael G.   +3 more
core   +1 more source