Results 61 to 70 of about 2,785,182 (312)

Draft genome sequence data of maqui (Aristotelia chilensis) and identification of SSR markers

Data in Brief, 2019
Maqui (Aristotelia chilensis [Molina] Stunz) is a small dioecious tree, belonging to the Elaeocarpaceae family. Maqui fruit has high levels of antioxidant activity, which are due to elevated anthocyanin and polyphenol content.
Adriana Bastías, Francisco Correa, Pamela Rojas, Constanza Martin, Jorge Pérez-Diaz, Cristian Yáñez, Mara Cuevas, Ricardo Verdugo, Boris Sagredo   +8 more
doaj   +1 more source

Raw Illumina reads (SRA PRJNA360290).

, 2017
Raw Illumina reads for all enriched samples included in this study.
Faircloth, Brant C., Longino, John T., Branstetter, Michael G., Ward, Philip S.   +3 more
core   +1 more source

Unique circulating miRNAome signatures captured with distinct molecular states in Lynch syndrome and sporadic colorectal cancer

Molecular Oncology, EarlyView.
Circulating microRNA profiles distinguish nonmalignant Lynch syndrome from cancer‐associated Lynch syndrome, sporadic colorectal cancer, and healthy controls. Age‐stratified analysis reveals disease‐specific regulatory states, and a six‐miRNA panel shows concordant separation in an independent colorectal tissue cohort.
Ramadhani Salum Chambuso, Md Shohel Ul Islam, Rosa M Xicola, Raj Ramesar, Xavier Llor, Sinclair Steele   +5 more
wiley   +1 more source

Sequencing and de novo transcriptome assembly of the Chinese giant salamander (Andrias davidianus)

Genomics Data, 2017
Next-generation technologies for determination of genomics and transcriptomics composition have a wide range of applications. Andrias davidianus, has become an endangered amphibian species of salamander endemic in China.
Yong Huang, Xiao Chan Gao, Jian Li Xiong, Hong Tao Ren, Xi Hong Sun   +4 more
doaj   +1 more source

Raw sequence reads.

, 2017
Raw Illumina reads for all newly sequenced samples from this ...
Pitts, James P., Buffington, Matthew L., Brady, Seán G., Faircloth, Brant C., Gates, Michael W., Kula, Robert R., Danforth, Bryan N., Branstetter, Michael G., Ward, Philip S.   +8 more
core   +1 more source

SPHINX31 acts as a SRPK1 inhibitor targeting the ATR/DNA‐PKcs/CHK1 replicative checkpoint to inhibit cell growth in non‐small cell lung cancer

Molecular Oncology, EarlyView.
The kinase SRPK1 directly interacts with the protein TOPBP1 and regulates the pre‐mRNA splicing of WIZ thereby contributing to the activation of the ATR/CHK1 replicative checkpoint in response to replicative stress. This allows cancer cells' genomic stability and survival.
Amani Shreim, Aurelie Genoux, Nadiia Zubchuk, Haoyang Zheng, Perla Salameh, Theo Ziegelmeyer, Fabien Dalonneau, Margot Rouchette, Christiane Oddou, Simona Miron, Helene Polveche, Adiilah Mamode Cassim, Carmen Garrido, Eleni Nikolakaki, Didier Auboeuf, Tao Jia, Sophie Zinn‐Justin, Beatrice Eymin   +17 more
wiley   +1 more source

Whole Genome Sequencing of Hepatitis A Virus Using a PCR-Free Single-Molecule Nanopore Sequencing Approach

Frontiers in Microbiology, 2020
Hepatitis A virus (HAV) is one of the most common causes of acute viral hepatitis in humans. Although HAV has a relatively small genome, there are several factors limiting whole genome sequencing such as PCR amplification artefacts and ambiguities in de ...
Frederico M. Batista, Tina Stapleton, James A. Lowther, Vera G. Fonseca, Rebecca Shaw, Christopher Pond, David I. Walker, Ronny van Aerle, Jaime Martinez-Urtaza, Jaime Martinez-Urtaza   +9 more
doaj   +1 more source

Optimization of seminal extracellular vesicle isolation protocols for cancer biomarker analysis using proteomic profiling

Molecular Oncology, EarlyView.
This paper shows that size‐exclusion chromatography and sequential centrifugation applied to seminal plasma enrich for different populations of extracellular vesicles. This may significantly affect the detection and analysis of extracellular vesicle‐associated cancer biomarkers.
Elen Telumyan, Beatriz Martín‐Gracia, Eva Bassols‐Citores, Krizia Sagini, Maria K. Andersen, Tuula A. Nyman, May‐Britt Tessem, Morten B. Rye, Alicia Llorente   +8 more
wiley   +1 more source

Deepbinner: Demultiplexing barcoded Oxford Nanopore reads with deep convolutional neural networks.

PLoS Computational Biology, 2018
Multiplexing, the simultaneous sequencing of multiple barcoded DNA samples on a single flow cell, has made Oxford Nanopore sequencing cost-effective for small genomes.
Ryan R Wick, Louise M Judd, Kathryn E Holt   +2 more
doaj   +1 more source

NCBI accession numbers and associated metadata for raw low-coverage genomic sequence reads from 876 different Atlantic silverside individuals

, 2022
Dataset: Atlantic silverside (Menidia menidia) raw low-coverage genomic sequence accessionsNCBI accession numbers and associated metadata for raw low-coverage genomic sequence reads from 876 different Atlantic silverside individuals For a complete list
Palumbi, Stephen R.
core   +1 more source