High-coverage sequencing and annotated assemblies of the budgerigar genome [PDF]
, 2014 BACKGROUND: Parrots belong to a group of behaviorally advanced vertebrates and have an advanced ability of vocal learning relative to other vocal-learning birds.
Aboukhalil, R. +23 more
core +1 more source
Draft Genome Sequence of Staphylococcus pseudintermedius Strain 13-13613, Isolated from a Case of Canine Pyoderma [PDF]
, 2020 Here, we report the draft genome sequence of Staphylococcus pseudintermedius strain 13-13613, isolated from a case of canine pyoderma.
Bäumer, Wolfgang +5 more
core +1 more source
Evaluation of experimental design and computational parameter choices affecting analyses of ChIP-seq and RNA-seq data in undomesticated poplar trees. [PDF]
, 2014 BackgroundOne of the great advantages of next generation sequencing is the ability to generate large genomic datasets for virtually all species, including non-model organisms.
Filkov, Vladimir +4 more
core +2 more sources
VeChat: correcting errors in long reads using variation graphs
bioRxiv, 2022 Error correction is the canonical first step in long-read sequencing data analysis. The current standard is to make use of a consensus sequence as a template. However, in mixed samples, such as metagenomes or organisms of higher ploidy, consensus induced
Xiao Luo, Xiongbin Kang, A. Schönhuth
semanticscholar +1 more source
RNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening
Genomics Data, 2017 Mangosteen (Garcinia mangostana L.) is known for its delectable taste and contains high amount of xanthones which have been reported to possess anti-cancer, anti-inflammatory and other bioactive properties.
Azhani Abdul-Rahman +4 more
doaj +1 more source
Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro [PDF]
, 2013 BACKGROUND: Mycobacterium bovis, the causative agent of bovine tuberculosis, is an intracellular pathogen that can persist inside host macrophages during infection via a diverse range of mechanisms that subvert the host immune response.
Browne, JA +13 more
core +2 more sources
High-throughput immune repertoire analysis with IGoR
Nature Communications, 2018 B and T cell receptor diversity can be studied by high-throughput immune receptor sequencing. Here, the authors develop a software tool, IGoR, that calculates the likelihoods of potential V(D)J recombination and somatic hypermutation scenarios from raw ...
Quentin Marcou +2 more
doaj +1 more source
Data in Brief, 2021 Lactiplantibacillus plantarum is a species found in a wide range of foods and other commodities. It can be used as starter or adjunct culture in fermented foods. Herein the annotated high-quality draft genome (scaffolds) of six L.
Maria K. Syrokou +5 more
doaj +1 more source
Optimization of miRNA-seq data preprocessing. [PDF]
, 2015 The past two decades of microRNA (miRNA) research has solidified the role of these small non-coding RNAs as key regulators of many biological processes and promising biomarkers for disease.
McPherson, John D +2 more
core +1 more source
MGmapper: Reference based mapping and taxonomy annotation of metagenomics sequence reads
PLoS ONE, 2017 An increasing amount of species and gene identification studies rely on the use of next generation sequence analysis of either single isolate or metagenomics samples.
T. Petersen +6 more
semanticscholar +1 more source