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Metagenomic data of bacterial community from different land uses at the river basin, Kelantan
Data in Brief, 2020 The data provided in the article includes the sequence of bacterial 16S rRNA gene from a high conservation value forest, logged forest, rubber plantation and oil palm plantation collected at Kelantan river basin.
Rennielyn Rupert +5 more
doaj +1 more source
Draft genome sequence data of Enterococcus faecium R9, a multiple enterocins-producing strain
Data in Brief, 2023 Food contamination by pathogens results in serious health problems and economic losses. Chemical food preservatives pose a risk to human health when used in food preservation.
Abrar Akbar +5 more
doaj +1 more source
DDBJ Activities: Contribution to the Research in Information Biology [PDF]
, 2009 DDBJ (DNA Data Bank of Japan; "http://www.ddbj.nig.ac.jp/":http://www.ddbj.nig.ac.jp/)started its database activities in 1986. From the beginning, DDBJ has been one of INSDC (International Nucleotide Sequence Database Collaboration; "http:/
Hideaki Sugawara +8 more
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F1000Research, 2019 The Sequence Distance Graph (SDG) framework works with genome assembly graphs and raw data from paired, linked and long reads. It includes a simple deBruijn graph module, and can import graphs using the graphical fragment assembly (GFA) format.
Luis Yanes +4 more
doaj +1 more source
De novo transcriptome assembly of the mycoheterotrophic plant Monotropa hypopitys
Genomics Data, 2017 Monotropa hypopitys (pinesap) is a non-photosynthetic obligately mycoheterotrophic plant of the family Ericaceae. It obtains the carbon and other nutrients from the roots of surrounding autotrophic trees through the associated mycorrhizal fungi. In order
Alexey V. Beletsky +8 more
doaj +1 more source
Improvement in detection of minor alleles in next generation sequencing by base quality recalibration [PDF]
, 2016 Recalibrated base quality scores for simulated data analyzed with different methods, compared to the empirical score. The ideal (diagonal) line is shown in each plot. The Frequency-Weighted Squared Error (FWSE) is given for each method.
Mark Stoneking, Shengyu Ni
core +2 more sources
TreeToReads - a pipeline for simulating raw reads from phylogenies. [PDF]
, 2017 BackgroundUsing phylogenomic analysis tools for tracking pathogens has become standard practice in academia, public health agencies, and large industries. Using the same raw read genomic data as input, there are several different approaches being used to
Allard, Marc +6 more
core +1 more source
BMC Research Notes, 2023 Objectives Pythium insidiosum is the causative agent of pythiosis, a difficult-to-treat condition, in humans and animals worldwide. Biological information about this filamentous microorganism is sparse. Genomes of several P.
Theerapong Krajaejun +6 more
doaj +1 more source
Data in Brief, 2018 We present raw sequence reads and genome assemblies derived from 17 accessions of the Ethiopian orphan crop plant enset (Ensete ventricosum (Welw.) Cheesman) using the Illumina HiSeq and MiSeq platforms. Also presented is a catalogue of single-nucleotide
Zerihun Yemataw +10 more
doaj +1 more source
Temporal and spatial differences in microbial composition during the manufacture of a Continental-type cheese [PDF]
, 2015 peer-reviewedWe sought to determine if the time, within a production day, that a cheese is manufactured has an influence on the microbial community present within that cheese.
Cotter, Paul D. +5 more
core +1 more source