Results 21 to 30 of about 2,785,182 (312)

De novo transcriptome assembly of the mycoheterotrophic plant Monotropa hypopitys

Genomics Data, 2017
Monotropa hypopitys (pinesap) is a non-photosynthetic obligately mycoheterotrophic plant of the family Ericaceae. It obtains the carbon and other nutrients from the roots of surrounding autotrophic trees through the associated mycorrhizal fungi. In order
Alexey V. Beletsky, Mikhail A. Filyushin, Eugeny V. Gruzdev, Alexander M. Mazur, Egor B. Prokhortchouk, Elena Z. Kochieva, Andrey V. Mardanov, Nikolai V. Ravin, Konstantin G. Skryabin   +8 more
doaj   +1 more source

PacBio long read-assembled draft genome of Pythium insidiosum strain Pi-S isolated from a Thai patient with pythiosis

BMC Research Notes, 2023
Objectives Pythium insidiosum is the causative agent of pythiosis, a difficult-to-treat condition, in humans and animals worldwide. Biological information about this filamentous microorganism is sparse. Genomes of several P.
Theerapong Krajaejun, Preecha Patumcharoenpol, Thidarat Rujirawat, Weerayuth Kittichotirat, Sithichoke Tangphatsornruang, Tassanee Lohnoo, Wanta Yingyong   +6 more
doaj   +1 more source

Reads2Vec: Efficient Embedding of Raw High-Throughput Sequencing Reads Data

Journal of Computational Biology, 2023
The massive amount of genomic data appearing for SARS-CoV-2 since the beginning of the COVID-19 pandemic has challenged traditional methods for studying its dynamics. As a result, new methods such as Pangolin, which can scale to the millions of samples of SARS-CoV-2 currently available, have appeared. Such a tool is tailored to take as input assembled,
Prakash Chourasia, Sarwan Ali, Simone Ciccolella, Gianluca Della Vedova, Murray Patterson   +4 more
openaire   +6 more sources

Genome sequence data from 17 accessions of Ensete ventricosum, a staple food crop for millions in Ethiopia

Data in Brief, 2018
We present raw sequence reads and genome assemblies derived from 17 accessions of the Ethiopian orphan crop plant enset (Ensete ventricosum (Welw.) Cheesman) using the Illumina HiSeq and MiSeq platforms. Also presented is a catalogue of single-nucleotide
Zerihun Yemataw, Sadik Muzemil, Daniel Ambachew, Leena Tripathi, Kassahun Tesfaye, Alemayheu Chala, Audrey Farbos, Paul O’Neill, Karen Moore, Murray Grant, David J. Studholme   +10 more
doaj   +1 more source

Whole genome sequencing data of Chromobacterium amazonense BASUSDA_45 isolated from soil in Bangladesh capable of degrading pesticide

Data in Brief, 2023
This article reports the Chromobacterium amazonense BASUSDA_45 strain's draft genomic sequence. The bacterium was isolated from cypermethrin pesticide contaminated soil and then the sequencing was carried out.
Md Atikur Rahman, Khaled Mahmud Sujon, Mohammad Tanbir Habib, Md. Forhad Hossain, K.M.K.B. Ferdaus, K.M.F. Hoque, Zennat Ferdousi, Md Abu Reza   +7 more
doaj   +1 more source

Shotgun metagenomic data of microbiomes on plastic fabrics exposed to harsh tropical environments

Data in Brief, 2020
The development of more affordable high-throughput DNA sequencing technologies and powerful bioinformatics is making of shotgun metagenomics a common tool for effective characterization of microbiomes and robust functional genomics. A shotgun metagenomic
Osman Radwan, Oscar N. Ruiz
doaj   +1 more source

Dataset of next-generation sequence reads of nanobody clones in phage display library derived from Indian desert camel (Camelus dromedarius L.)

Data in Brief, 2021
Next-generation sequences (NGS) dataset of nanobody (Nb) clones in a phage display library (PDL) is of immense value as it serves in many different ways, such as: i). estimating the library size, ii).
Somesh Banerjee, Ajit Singh, Jagveer Rawat, Nitish Bansal, Sushila Maan   +4 more
doaj   +1 more source

Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree

Nature Biotechnology, 2023
Abstract Current methods for inference of phylogenetic trees require running complex pipelines at substantial computational and labor costs, with additional constraints in sequencing coverage, assembly and annotation quality, especially for large datasets.
David Dylus, Adrian Altenhoff, Sina Majidian, Fritz J. Sedlazeck, Christophe Dessimoz   +4 more
openaire   +6 more sources

A direct comparison of the KB™ Basecaller and phred for identifying the bases from DNA sequencing using chain termination chemistry

BMC Research Notes, 2010
Background Relatively recently, the software KB™ Basecaller has replaced phred for identifying the bases from raw sequence data in DNA sequencing employing dideoxy chemistry. We have measured quantitatively the consequences of that change.
Jiang Hui, Hyman Richard W, Fukushima Marilyn, Davis Ronald W   +3 more
doaj   +1 more source

RNA-seq analysis of mangosteen (Garcinia mangostana L.) fruit ripening

Genomics Data, 2017
Mangosteen (Garcinia mangostana L.) is known for its delectable taste and contains high amount of xanthones which have been reported to possess anti-cancer, anti-inflammatory and other bioactive properties.
Azhani Abdul-Rahman, Hoe-Han Goh, Kok-Keong Loke, Normah Mohd Noor, Wan Mohd Aizat   +4 more
doaj   +1 more source