Results 1 to 10 of about 2,785,182 (312)

FASTQuick: Rapid and Comprehensive Quality Assessment of Raw Sequence Reads. [PDF]

GigaScience, 2021
Abstract Background Rapid and thorough quality assessment of sequenced genomes on an ultra-high-throughput scale is crucial for successful large-scale genomic studies. Comprehensive quality assessment typically requires full genome alignment, which costs a substantial amount of computational ...
Hyun Min Kang, Fan Zhang
exaly   +7 more sources

Integrated miRNA expression dataset in ruminant hosts naturally infected with cystic echinococcosis [PDF]

Data in Brief
Cystic echinococcosis is a zoonotic infection caused by the larval stage of Echinococcus granulosus sensu lato and remains endemic in several livestock-producing regions.
Paola Pepe, Giovanna Maria Ventola, Elena Ciccone, Giovanna Marchese, Nunzio Antonio Cacciola, Antonio Bosco, Maria Paola Maurelli, Jacopo Guccione, Mariele De Santi, Gaetano Oliva, Laura Rinaldi   +10 more
doaj   +2 more sources

GSA: Genome Sequence Archive*

Genomics, Proteomics & Bioinformatics, 2017
With the rapid development of sequencing technologies towards higher throughput and lower cost, sequence data are generated at an unprecedentedly explosive rate.
Yanqing Wang, Fuhai Song, Junwei Zhu, Sisi Zhang, Yadong Yang, Tingting Chen, Bixia Tang, Lili Dong, Nan Ding, Qian Zhang, Zhouxian Bai, Xunong Dong, Huanxin Chen, Mingyuan Sun, Shuang Zhai, Yubin Sun, Lei Yu, Li Lan, Jingfa Xiao, Xiangdong Fang, Hongxing Lei, Zhang Zhang, Wenming Zhao   +22 more
doaj   +3 more sources

Complete chloroplast genome sequence data of [PDF]

Data in Brief
This data article describes the complete chloroplast genome sequence data of Camellia handelii Sealy, a fragrant-flowered species of Camellia sect. Theopsis . Fresh young leaves were collected from a cultivated individual in Changsha, China.
Zhun Xiao, Jinrui Yan
doaj   +2 more sources

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Scientific Reports, 2021
Third-generation sequencing technologies allow to sequence long reads of tens of kbp, that are expected to solve various problems. However, they display high error rates, currently capped around 10%.
Pierre Morisse, Camille Marchet, Antoine Limasset, Thierry Lecroq, Arnaud Lefebvre   +4 more
doaj   +1 more source

De novo characterization of the Lycium ruthenicum transcriptome and analysis of its digital gene expression profiles during fruit development and ripening [PDF]

Archives of Biological Sciences, 2017
Lycium ruthenicum Murr., which belongs to the family Solanaceae, is a resource plant for Chinese traditional medicine and nutraceutical foods. In this study, RNA sequencing was applied to obtain raw reads of L.
Peng Yong, Ma Huiqin, Chen Shangwu
doaj   +1 more source

RNA-seq data from C-X-C chemokine receptor type 5 (CXCR5) gene knockout aged mice with retinal degeneration phenotype

Data in Brief, 2020
The CXCR5 (C-X-C motif chemokine receptor 5) is chemokine transmembrane receptor, acting via its ligand CXCL13 and plays a crucial role in controlling the trafficking of inflammatory cells into and from the sub-retinal space, which contributes to the ...
Madhu Sudhana Saddala, Anton Lennikov, Hu Huang   +2 more
doaj   +1 more source

Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus [PDF]

PeerJ, 2018
Genome sequencing is rapidly being adopted in reference labs and hospitals for bacterial outbreak investigation and diagnostics where time is critical.
Andrew J. Page, Jacqueline A. Keane
doaj   +2 more sources

The complete genome sequence of Stevia rebaudiana, the Sweetleaf [version 1; peer review: 2 approved, 1 approved with reservations]

F1000Research, 2020
The Sweetleaf (Stevia rebaudiana: Asteraceae) is widely grown for use as a sweetener.  We present the whole genome sequence and annotation of this species.  A total of 146,838,888 paired-end reads consisting of 22.2G bases were obtained by sequencing one
Kathleen O'Neill, Stacy Pirro
doaj   +1 more source

Reducing the effects of PCR amplification and sequencing artifacts on 16S rRNA-based studies. [PDF]

PLoS ONE, 2011
The advent of next generation sequencing has coincided with a growth in interest in using these approaches to better understand the role of the structure and function of the microbial communities in human, animal, and environmental health.
Patrick D Schloss, Dirk Gevers, Sarah L Westcott   +2 more
doaj   +1 more source