Results 261 to 270 of about 399,495 (297)

Non-human primates raw sequence reads

2015
We introduced a new method to resequence the exome of Non-human primates (NHP) species by a designed capture approach specifically targeted to the NHP, and demonstrate its superior performance on four NHP species or subspecies.
openaire   +1 more source

Genome re-sequencing of Liriodendron species Raw sequence reads

2017
Genome re-sequencing of fourteen Liriodendron chinense and six Liriodendron tulipifera adult ...
openaire   +1 more source

Homo sapiens nasopharyngeal carcinoma raw sequence reads

2015
MicroRNAs (miRNAs) have been shown to play a considerable role in the development and progression of nasopharyngeal carcinoma(NPC). Despite accumulating studies on the molecular mechanisms of NPC, the miRNA regulatory networks in cancer progression remain largely unknown.
openaire   +1 more source

Drosophilid and associated microflora Raw sequence reads

2016
We used the illumina platform to sequence poly-A selected and rRNA-depleted RNA from large numbers (hundreds) of wild-caught Drosophila, to survey the presence of viral sequences and to assemble new virus genomes. We targeted D. obscura, D. subobscura, D. tristis, D. subsilvestris, D.
openaire   +1 more source

16s rRNA of 2178 stool samples raw sequence reads

2020
Our study was based on the Guangzhou Nutrition and Health Study (GNHS). Stool samples were collected during the on-site visit of the participants at Sun Yat-sen University. All samples were manually stirred, separated into tubes and stored at -80℃ within four hours.
openaire   +1 more source

Turnip yellow mosaic virus Raw sequence reads

2015
Mutational Bias of Turnip Yellow Mosaic Virus in the Context of Host Anti-viral Gene ...
openaire   +1 more source

Sugarcane(Saccharum spontaneum) genome raw sequence reads and transcriptome reads

2017
Due to sugarcane's high polyploidy, it hinders the genome based breeding programs. Here we sequence wild sugarcane (Saccharum spontaneum) which is the ancestor of the modern cultivars, with less complexity.
openaire   +1 more source

Scalable and unsupervised discovery from raw sequencing reads using SPLASH2

Nature Biotechnology
We introduce SPLASH2, a fast, scalable implementation of SPLASH based on an efficient k-mer counting approach for regulated sequence variation detection in massive datasets from a wide range of sequencing technologies and biological contexts. We demonstrate biological discovery by SPLASH2 in single-cell RNA sequencing (RNA-seq) data and in bulk RNA-seq
Marek Kokot, Roozbeh Dehghannasiri, Tavor Baharav, Julia Salzman, Sebastian Deorowicz   +4 more
openaire   +2 more sources

Shotgun metagenomic sequencing Raw sequence reads available from stool specimens of 18 patients with myasthenia gravis

2023
Fecal samples from 24 MG patients and 16 gender and age-matched healthy controls were collected for metagenomic sequencing.
openaire   +1 more source

Homo sapiens cultivar:PLC/PRF/5 Raw sequence reads

2017
PLC/PRF/5 WGS and WGBS ...
openaire   +1 more source