Human Metabolome Reference Database in a Biracial Cohort across the Adult Lifespan [PDF]
Metabolites, 2023 As one of the OMICS in systems biology, metabolomics defines the metabolome and simultaneously quantifies numerous metabolites that are final or intermediate products and effectors of upstream biological processes.
Qu Tian +9 more
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Developing a Reference Database for Typical Body and Organ Growth of the Artificially Reared Pig as a Biomedical Research Model [PDF]
Frontiers in Pediatrics, 2021 Objectives: The pig is a common model utilized to support substantiation of novel bioactive components in infant formula. However, reference ranges for outcomes to determine safety are unclear.
Vinh H. Vu +9 more
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PhyloRef: A Semi‐Automated Workflow for eDNA Reference Database Curation via Phylogenetic Anomaly Detection [PDF]
Ecology and EvolutionEnvironmental DNA (eDNA) analysis depends critically on high‐quality reference databases. However, widely used public repositories (e.g., NCBI) frequently suffer from annotation error, species misidentification, and sequence contamination, leading to ...
Yan Mai, Chenhong Li
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MultiTax-human: an extensive and high-resolution human-related full-length 16S rRNA reference database and taxonomy [PDF]
Microbiology SpectrumConsidering that the human microbiota plays a critical role in health and disease, an accurate and high-resolution taxonomic classification is thus essential for meaningful microbiome analysis.
Zhiwei Bao +3 more
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RESCRIPt: Reproducible sequence taxonomy reference database management. [PDF]
PLoS Computational Biology, 2021 Nucleotide sequence and taxonomy reference databases are critical resources for widespread applications including marker-gene and metagenome sequencing for microbiome analysis, diet metabarcoding, and environmental DNA (eDNA) surveys.
Michael S Robeson +6 more
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A Reference Database of Standardised Continuous Lumbar Intervertebral Motion Analysis for Conducting Patient-Specific Comparisons [PDF]
Frontiers in Bioengineering and Biotechnology, 2021 Lumbar instability has long been thought of as the failure of lumbar vertebrae to maintain their normal patterns of displacement. However, it is unknown what these patterns consist of.
Alexander Breen +8 more
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Atoms, 2020 The application described has been designed to create bibliographic entries in large databases with diverse sources automatically, which reduces both the frequency of mistakes and the workload for the administrators.
Frances M. Skinner +5 more
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Mare-MAGE curated reference database of fish mitochondrial genes [PDF]
BMC Genomic Data, 2023 Biodiversity assessment approaches based on molecular biology techniques such as metabarcoding, RAD-seq, or SnaPshot sequencing are increasingly applied in assessing marine and aquatic ecosystems.
Yassine Kasmi +2 more
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Artificial neural network scheme to solve the hepatitis B virus model
Frontiers in Applied Mathematics and Statistics, 2023 This article aims to describe the simulation studies of the hepatitis B virus non-linear system using supervised neural networks procedures supported by Levenberg-Marquardt back propagation methodology. The proposed strategy has five distinct quantities:
Qusain Haider +2 more
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Rare phylotypes in stone, stool, and urine microbiomes are associated with urinary stone disease
Frontiers in Molecular Biosciences, 2023 Introduction: In complex microbial communities, the importance of microbial species at very low abundance levels and their prevalence for overall community structure and function is increasingly being recognized.
Mangesh Suryavanshi +3 more
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