Subpar reporting of pre‐analytical variables in RNA‐focused blood plasma studies
Pre‐analytical variables strongly influence the analysis of extracellular RNA (cell‐free RNA; exRNA) derived from blood plasma. Their reporting is essential to allow interpretation and replication of results. By evaluating 200 exRNA studies, we pinpoint a lack of reporting pre‐analytical variables associated with blood collection, plasma preparation ...
Céleste Van Der Schueren+16 more
wiley +1 more source
A Survey on Reproducibility in Parallel Computing [PDF]
We summarize the results of a survey on reproducibility in parallel computing, which was conducted during the Euro-Par conference in August 2015. The survey form was handed out to all participants of the conference and the workshops. The questionnaire, which specifically targeted the parallel computing community, contained questions in four different ...
arxiv
ReproduceMeGit: A Visualization Tool for Analyzing Reproducibility of Jupyter Notebooks [PDF]
Computational notebooks have gained widespread adoption among researchers from academia and industry as they support reproducible science. These notebooks allow users to combine code, text, and visualizations for easy sharing of experiments and results.
arxiv
DeepZensols: Deep Natural Language Processing Framework [PDF]
Reproducing results in publications by distributing publicly available source code is becoming ever more popular. Given the difficulty of reproducing machine learning (ML) experiments, there have been significant efforts in reducing the variance of these results.
arxiv
Research method in AI: Reproducibility of results [PDF]
In recent years, increasing attention has been given to an apparent issue within the scientific fields where the reproducibility of scientific results is questioned. This trend is commonly termed a crisis of reproducibility, or a reproducibility crisis.
Nilsen, Nicklas Grimstad
core
Reproduce experimental results from a paper
Reproduce experimental results from a paper: Do Channels Matter?
Ceranic, Amila+2 more
openaire +1 more source
Surfaceome: a new era in the discovery of immune evasion mechanisms of circulating tumor cells
In the era of immunotherapies, many patients either do not respond or eventually develop resistance. We propose to pave the way for proteomic analysis of surface‐expressed proteins called surfaceome, of circulating tumor cells. This approach seeks to identify immune evasion mechanisms and discover potential therapeutic targets. Circulating tumor cells (
Doryan Masmoudi+3 more
wiley +1 more source
A Backend Platform for Supporting the Reproducibility of Computational Experiments [PDF]
In recent years, the research community has raised serious questions about the reproducibility of scientific work. In particular, since many studies include some kind of computing work, reproducibility is also a technological challenge, not only in computer science, but in most research domains. Replicability and computational reproducibility are not
arxiv
Reproducibility of cognitive endpoints in clinical trials: Lessons from neurofibromatosis type 1 [PDF]
OBJECTIVE: Rapid developments in understanding the molecular mechanisms underlying cognitive deficits in neurodevelopmental disorders have increased expectations for targeted, mechanism-based treatments.
et al,+2 more
core +1 more source
HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
Hi-C is a powerful technology for studying genome-wide chromatin interactions. However, current methods for assessing Hi-C data reproducibility can produce misleading results because they ignore spatial features in Hi-C data, such as domain structure and
Tao Yang+6 more
semanticscholar +1 more source