Results 91 to 100 of about 2,676,768 (277)

SSW library: an SIMD Smith-Waterman C/C++ library for use in genomic applications. [PDF]

open access: yesPLoS ONE, 2013
The Smith-Waterman algorithm, which produces the optimal pairwise alignment between two sequences, is frequently used as a key component of fast heuristic read mapping and variation detection tools for next-generation sequencing data. Though various fast
Mengyao Zhao   +3 more
doaj   +1 more source

Rheological Model for Wood [PDF]

open access: yes, 2014
Wood as the most important natural and renewable building material plays an important role in the construction sector. Nevertheless, its hygroscopic character basically affects all related mechanical properties leading to degradation of material ...
Hassani, Mohammad Masoud   +3 more
core  

A damage-based temperature-dependent model for ductile fracture with finite strains and configurational forces [PDF]

open access: yes, 2012
A temperature dependent model for ductile ...
Areias, Pedro, Van Goethem, N.
core   +1 more source

Polarization‐resolved femtosecond Vis/IR spectroscopy tailored for resolving weak signals in biological samples using minimal sample volume

open access: yesFEBS Open Bio, EarlyView.
Unique biological samples, such as site‐specific mutant proteins, are available only in limited quantities. Here, we present a polarization‐resolved transient infrared spectroscopy setup with referencing to improve signal‐to‐noise tailored towards tracing small signals. We provide an overview of characterizing the excitation conditions for polarization‐
Clark Zahn, Karsten Heyne
wiley   +1 more source

Comparison of All Return Cover Index (ARCI) and First Return Cover Index (FRCI) Methods for Mapping Percentage of Mangrove Canopy Cover using LiDAR Data

open access: yesIndonesian Journal of Geography
Indonesia has the largest mangrove forest in the world, around 3.3 million hectares or 19.5% of the entire mangrove’s world population. Mangroves have many ecological and economic benefits and are also threatened by several conditions, such as a decrease
Mulyanto M, Muhammad Kamal
doaj   +1 more source

Elastoplastic constitutive modeling for concrete: a theoretical and computational approach

open access: yesRevista IBRACON de Estruturas e Materiais, 2020
This article presents a study of the plasticity model applicability to concrete in a theoretical framework that generalizes the formulation of constitutive models for physically nonlinear analysis of structures.
D. B. OLIVEIRA   +2 more
doaj   +1 more source

A light‐triggered Time‐Resolved X‐ray Solution Scattering (TR‐XSS) workflow with application to protein conformational dynamics

open access: yesFEBS Open Bio, EarlyView.
Time‐resolved X‐ray solution scattering captures how proteins change shape in real time under near‐native conditions. This article presents a practical workflow for light‐triggered TR‐XSS experiments, from data collection to structural refinement. Using a calcium‐transporting membrane protein as an example, the approach can be broadly applied to study ...
Fatemeh Sabzian‐Molaei   +3 more
wiley   +1 more source

Single‐molecule DNA flow‐stretch assays for high‐throughput DNA–protein interaction studies

open access: yesFEBS Open Bio, EarlyView.
We describe an optimised single‐molecule DNA flow‐stretch assay that visualises DNA–protein interactions in real time. Linear DNA fragments are tethered to a surface and stretched by buffer flow for fluorescence imaging. Using λ and φX174 DNA, this protocol enhances reproducibility and accessibility, providing a versatile approach for studying diverse ...
Ayush Kumar Ganguli   +8 more
wiley   +1 more source

Analysing the significance of small conformational changes and low occupancy states in serial crystallographic data

open access: yesFEBS Open Bio, EarlyView.
This protocol paper outlines methods to establish the success of a time‐resolved serial crystallographic experiment, by means of statistical analysis of timepoint data in reciprocal space and models in real space. We show how to amplify the signal from excited states to visualise structural changes in successful experiments.
Jake Hill   +4 more
wiley   +1 more source

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