Results 171 to 180 of about 345,547 (215)

scCCTR: An iterative selection-based semi-supervised clustering model for single-cell RNA-seq data. [PDF]

Comput Struct Biotechnol J
Chen J, Sun Q, Wang C, Gao C.
europepmc   +1 more source

scMUG: deep clustering analysis of single-cell RNA-seq data on multiple gene functional modules. [PDF]

Brief Bioinform
Liang DM, Du PF.
europepmc   +1 more source

Integrative Analysis of ATAC-Seq and RNA-Seq Identifies Key Genes Affecting Muscle Development in Ningxiang Pigs. [PDF]

Int J Mol Sci
Tan W, Liu C, Liu J, Wen S, Chen Y, Ren R, Gao N, Ding X, He J, Zhang Y.   +9 more
europepmc   +1 more source

Bayesian identification of differentially expressed isoforms using a novel joint model of RNA-seq data. [PDF]

PLoS Comput Biol
Shi X, Wang X, Jin L, Halakivi-Clarke L, Clarke R, Neuwald AF, Xuan J.   +6 more
europepmc   +1 more source

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RNA-Seq UD: A bioinformatics plattform for RNA-Seq analysis

2015 10th Iberian Conference on Information Systems and Technologies (CISTI), 2015
In this work is presented a process of design and building of a software that gather the tools required for a RNA-Seq data bioinformatics research. From the proposed a workflow is proposed that represents all a process that goes through the main stages of the treatment of transcriptomic and next generation sequencing data, such as preprocessing ...
Miguel A. Ramírez, Nelson Enrique Vera-Parra, Cristian Alejandro Rojas-Quintero   +2 more
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The true RNA-seq [PDF]

Nature Methods, 2009
With a modified polymerase and optimized oligonucleotide chemistry, Helicos' single-molecule sequencer takes on RNA.
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RNA-Seq in Nonmodel Organisms

2021
RNA-Seq is nowadays an indispensable approach for comparative transcriptome profiling in model and nonmodel organisms. Analyzing RNA-Seq data from nonmodel organisms poses unique challenges, due to unavailability of a high-quality genome reference and to relative sparsity of tools for downstream functional analyses.
openaire   +3 more sources

RNA-Seq unleashed

Nature Biotechnology, 2011
A transcriptome can be readily assembled from RNA-Seq data in the absence of a reference genome.
Matthew K. Iyer, Arul M. Chinnaiyan
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