Eight soybean reference genome resources from varying latitudes and agronomic traits
Scientific Data, 2021 Measurement(s) DNA • RNA • sequence_assembly • genome • sequence feature annotation Technology Type(s) DNA sequencing • RNA sequencing • sequence assembly process • sequence annotation Sample Characteristic - Organism Soybean Machine-accessible metadata ...
Jeffrey Shih-Chieh Chu +9 more
doaj +1 more source
Encoding folding paths of RNA switches [PDF]
, 2006 RNA co-transcriptional folding has long been suspected to play an active role in helping proper native folding of ribozymes and structured regulatory motifs in mRNA untranslated regions.
Harlepp, S. +3 more
core +3 more sources
Deciphering the RRM-RNA recognition code: A computational analysis.
PLoS Computational Biology, 2023 RNA recognition motifs (RRM) are the most prevalent class of RNA binding domains in eucaryotes. Their RNA binding preferences have been investigated for almost two decades, and even though some RRM domains are now very well described, their RNA ...
Joel Roca-Martínez +3 more
doaj +1 more source
One-Pot Production of RNA in High Yield and Purity Through Cleaving Tandem Transcripts
Molecules, 2020 There is an increasing demand for efficient and robust production of short RNA molecules in both pharmaceutics and research. A standard method is in vitro transcription by T7 RNA polymerase.
Hannes Feyrer +3 more
doaj +1 more source
Nucleotide sequence and genomic organization of an ophiovirus associated with lettuce big-vein disease [PDF]
, 2002 The complete nucleotide sequence of an ophiovirus associated with lettuce big-vein disease has been elucidated. The genome consisted of four RNA molecules of approximately 7ò8, 1ò7, 1ò5 and 1ò4 kb.
Dullemans, A.M. +3 more
core +2 more sources
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA
BMC Bioinformatics, 2010 Background In recent years, the number of available RNA structures has rapidly grown reflecting the increased interest on RNA biology. Similarly to the studies carried out two decades ago for proteins, which gave the fundamental grounds for developing ...
Capriotti Emidio, Marti-Renom Marc A
doaj +1 more source
Identification and sequence determination of a novel double-stranded RNA mycovirus from the entopathogenic fungus Beauveria bassina [PDF]
, 2015 The final publication is available at Springer via https://doi.org/10.1007/s00705-014-2332-8.An isolate of the entomopathogenic fungus Beauveria bassiana was found to contain five double-stranded (ds) RNA elements ranging from 1.5 to more than 3 kbp. The
Coutts, Robert H.A. +2 more
core +1 more source
Circular RNAs in endometriosis analyzed through RNA sequencing and bioinformatics for expression profile [PDF]
PeerJBackground Endometriosis severely affects women’s physical and mental health; it is particularly important to find targets for the treatment and diagnosis of endometriosis.
Yan Yue, Jing Qian, Dandan Gui, Bin Lu
doaj +2 more sources
Development of strategies for SNP detection in RNA-seq data: application to lymphoblastoid cell lines and evaluation using 1000 Genomes data. [PDF]
PLoS ONE, 2013 Next-generation RNA sequencing (RNA-seq) maps and analyzes transcriptomes and generates data on sequence variation in expressed genes. There are few reported studies on analysis strategies to maximize the yield of quality RNA-seq SNP data.
Emma M Quinn +7 more
doaj +1 more source
Effects of RNA branching on the electrostatic stabilization of viruses [PDF]
, 2016 Many single-stranded (ss) RNA viruses self assemble from capsid protein subunits and the nucleic acid to form an infectious virion. It is believed that the electrostatic interactions between the negatively charged RNA and the positively charged viral ...
Erdemci-Tandogan, Gonca +4 more
core +3 more sources