Results 1 to 10 of about 851,151 (347)

Compilation of 5S rRNA and 5S rRNA gene sequences

Nucleic Acids Research, 1990
The BERLIN RNA DATABANK as of December 31, 1989, contains a total of 667 sequences of 5S rRNAs or their genes, which is an increase of 114 new sequence entries over the last compilation (1). It covers sequences from 44 archaebacteria, 267 eubacteria, 20 plastids, 6 mitochondria, 319 eukaryotes and 11 eukaryotic pseudogenes.
T, Specht, J, Wolters, V A, Erdmann
openaire   +5 more sources

Tax4Fun2: prediction of habitat-specific functional profiles and functional redundancy based on 16S rRNA gene sequences

Environmental Microbiome, 2020
Sequencing of 16S rRNA genes has become a powerful technique to study microbial communities and their responses towards changing environmental conditions in various ecosystems.
F. Wemheuer, Jessica A. Taylor, R. Daniel, E. Johnston, P. Meinicke, T. Thomas, B. Wemheuer   +6 more
semanticscholar   +1 more source

Ion torrent-based transcriptional assessment of a Corynebacterium pseudotuberculosis equi strain reveals denaturing high-performance liquid chromatography a promising rRNA depletion method [PDF]

, 2013
Corynebacterium pseudotuberculosis equi is a Gram-positive pathogenic bacterium which affects a variety of hosts. Besides the great economic losses it causes to horse-breeders, this organism is also known to be an important infectious agent to cattle and
Azarani, Azarani, Baird, Barakat, Biberstein, Braverman, Bustin, Chen, Chen, Colbert, Conesa, Efstratiou, Gaspar, Hantke, Jones, Jünemann, Lukashin, Martin, Meldrum, Muto, Nguyen, Nolden, Pacheco, Papp-Wallace, Patel, Paton, Pfaffl, Piddington, Pinho, Pinto, Ramos, Ramos, Richardson, Ruiz, Sambrook, Schulz, Sorek, Spier, Swiercz, Trost, Vliet, Weinberg, Westermann, Wong, Zerbino   +44 more
core   +1 more source

Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment [PDF]

, 2016
Acknowledgements The authors wish to thank Mark Stares, Richard Rance, and other members of the Wellcome Trust Sanger Institute’s 454 sequencing team for generating the 16S rRNA gene data. Lili Fox Vélez provided editorial support.
Astrovskaya, Irina, Chakraborty, Subhra, Corrada Bravo, Héctor, Harro, Clayton, Li, Shan, Lindsay, Brianna R., Parkhill, Julian, Paulson, Joseph N., Pop, Mihai, Sack, David A., Stine, O. Colin, Walker, Alan W., Walker, Richard I.   +12 more
core   +2 more sources

Compilation of 5S rRNA and 5S rRNA gene sequences

Nucleic Acids Research, 1988
The BERLIN RNA DATABANK as of December 31, 1987, contains a total of 509 sequences of 5S rRNAs or their genes, which is an increase of 45% over the last (1986) compilation (1). It covers sequences from 38 archaebacteria, 184 eubacteria, 14 plastids, 4 mitochondria, 258 eukaryotes and 11 eukaryotic pseudogenes. The BERLIN RNA DATABANK uses the format of
J, Wolters, V A, Erdmann
openaire   +3 more sources

Evidence for diversifying selection of genetic regions of encoding putative collagen-like host-adhesive fibers in Pasteuria penetrans [PDF]

, 2019
© FEMS 2018. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided ...
Anderson, Andrews, Arohi Srivastava, Arslan, Atibalentja, Aziz, Carver, Charles, Cohan, Colson, Davies, Davies, Davies, Davies, Davies, Davies, Degnan, DePristo, Duan, Dutta, Eardly, Espanol, Felsenstein, Filée, Gascuel, Giblin-Davis, Giblin-Davis, Huynen, Jones, Kanehisa, Kaufman, Keith G Davies, Kumar, Legendre, Luijckx, Luijckx, Maddison, Mauchline, McElroy, Metchnikoff, Mohan, Mohan, Mouton, Murtagh, Noel, Philippe, R Developement Core Team, Radó-Trilla, Rajendhran, Romero, Rutherford, Sayre, Sayre, Schouls, Sharad Mohan, Sharma, Stackebrandt, Starr, Steichen, Stirling, Stirling, Sturhan, Sylvestre, Sylvestre, Tamura, Tim H Mauchline, Todd, Wiedenbeck, Woese, Yap, Zilversmit   +70 more
core   +3 more sources

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons.

Genome Research, 2011
Bacterial diversity among environmental samples is commonly assessed with PCR-amplified 16S rRNA gene (16S) sequences. Perceived diversity, however, can be influenced by sample preparation, primer selection, and formation of chimeric 16S amplification ...
B. Haas, D. Gevers, A. Earl, M. Feldgarden, D. Ward, G. Giannoukos, Dawn M. Ciulla, D. Tabbaa, S. Highlander, E. Sodergren, B. Methé, T. DeSantis, J. Petrosino, R. Knight, B. Birren   +14 more
semanticscholar   +1 more source

An expanded multilocus sequence typing scheme for propionibacterium acnes : investigation of 'pathogenic', 'commensal' and antibiotic resistant strains [PDF]

, 2012
The Gram-positive bacterium Propionibacterium acnes is a member of the normal human skin microbiota and is associated with various infections and clinical conditions.
Barnard, E. (Emma), Cove, Jonathan, Eady, Anne, Gao, Anna, Li, Huiying, McDowell, A. (Andrew), Nagy, I. (István), Nord, Carl Erik, Patrick, Sheila, Tomida, Shuta   +9 more
core   +3 more sources

Comparing bioinformatic pipelines for microbial 16S rRNA amplicon sequencing

PLoS ONE, 2020
Microbial amplicon sequencing studies are an important tool in biological and biomedical research. Widespread 16S rRNA gene microbial surveys have shed light on the structure of many ecosystems inhabited by bacteria, including the human body.
A. Prodan, V. Tremaroli, Harald Brolin, A. Zwinderman, M. Nieuwdorp, E. Levin   +5 more
semanticscholar   +1 more source

Increased variability of microbial communities in restored salt marshes nearly 30 years after tidal flow restoration [PDF]

, 2012
We analyzed microbial diversity and community composition from four salt marsh sites that were impounded for 40–50 years and subsequently restored and four unimpounded sites in southeastern Connecticut over one growing season.
Bernhard, Anne E, Marshall, David, Yiannos, Lazaros   +2 more
core   +3 more sources