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Structural Diversities and Phylogenetic Signals in Plastomes of the Early-Divergent Angiosperms: A Case Study in Saxifragales [PDF]

Plants, 2022
As representative of the early-divergent groups of angiosperms, Saxifragales is extremely divergent in morphology, comprising 15 families. Within this order, our previous case studies observed significant structural diversities among the plastomes of ...
Shiyun Han, Hengwu Ding, De Bi, Sijia Zhang, Ran Yi, Jinming Gao, Jianke Yang, Yuanxin Ye, Longhua Wu, Xianzhao Kan   +9 more
doaj   +7 more sources

Plastid phylogenomics and fossil evidence provide new insights into the evolutionary complexity of the ‘woody clade’ in Saxifragales [PDF]

BMC Plant Biology
Background The “woody clade” in Saxifragales (WCS), encompassing four woody families (Altingiaceae, Cercidiphyllaceae, Daphniphyllaceae, and Hamamelidaceae), is a phylogenetically recalcitrant node in the angiosperm tree of life, as the interfamilial ...
Linbo Jia, Shuying Wang, Jinjin Hu, Ke Miao, Yongjiang Huang, Yunheng Ji   +5 more
doaj   +7 more sources

The complete chloroplast genome of Echeveria lilacina Kimnach & Moran 1980 (Saxifragales: Crassulaceae) [PDF]

Mitochondrial DNA. Part B. Resources, 2022
Echeveria lilacina Kimnach & Moran is a succulent plant having ornamental and ecological importance. In this study, the first complete chloroplast genome of Echeveria lilacina, a species belonging to the Crassulaceae family, was characterized from the de
Gyoungju Nah, Ji Ran Jeong, Jae Hwan Lee, Soon Yil Soh, Sang Yong Nam   +4 more
doaj   +6 more sources

Codon Usage Analyses Reveal the Evolutionary Patterns among Plastid Genes of Saxifragales at a Larger-Sampling Scale. [PDF]

Genes (Basel), 2023
Saxifragales is a 15-family order of early-divergent Eudicots with a rich morphological diversity and an ancient rapid radiation. Codon usage bias (CUB) analyses have emerged as an essential tool for understanding the evolutionary dynamics in genes. Thus
Bi, Han S, Zhou J, Zhao M, Zhang S, Kan X.   +5 more
europepmc   +6 more sources

Complete chloroplast genome of Sedum sarmentosum and chloroplast genome evolution in Saxifragales. [PDF]

PLoS ONE, 2013
Comparative chloroplast genome analyses are mostly carried out at lower taxonomic levels, such as the family and genus levels. At higher taxonomic levels, chloroplast genomes are generally used to reconstruct phylogenies.
Wenpan Dong, Chao Xu, Tao Cheng, Shiliang Zhou   +3 more
doaj   +7 more sources

Complete plastome sequence of Paeonia lactiflora Pall. (Paeoniaceae: Saxifragales) [PDF]

Mitochondrial DNA. Part B. Resources, 2018
Paeonia lactiflora has been listed as an Endangered species in Russian Federation. The complete plastome was assembled from Next-Generation Sequencing data. It is 152,747 bp in length.
Tahir H. Samigullin, Maria D. Logacheva, Galina V. Degtjareva, Sergey V. Efimov, Elena I. Terentieva, Carmen M. Vallejo-Roman   +5 more
doaj   +6 more sources

Elatinaceae are sister to Malpighiaceae; Peridiscaceae belong to Saxifragales [PDF]

American Journal of Botany, 2004
Phylogenetic data from plastid (ndhF and rbcL) and nuclear (PHYC) genes indicate that, within the order Malpighiales, Elatinaceae are strongly supported as sister to Malpighiaceae.
Charles C. Davis, Mark W. Chase
core   +10 more sources

Next-Generation Genome Sequencing of Sedum plumbizincicola Sheds Light on the Structural Evolution of Plastid rRNA Operon and Phylogenetic Implications within Saxifragales [PDF]

Plants, 2019
The genus Sedum, with about 470 recognized species, is classified in the family Crassulaceae of the order Saxifragales. Phylogenetic relationships within the Saxifragales are still unresolved and controversial.
Hengwu Ding, Ran Zhu, Jinxiu Dong, De Bi, Lan Jiang, Juhua Zeng, Qingyu Huang, Huan Liu, Wenzhong Xu, Longhua Wu, Xianzhao Kan   +10 more
doaj   +7 more sources

Strong foraging preferences for Ribes alpinum (Saxifragales: Grossulariaceae) in the polyphagous caterpillars of Buff‐tip moth Phalera bucephala (Lepidoptera: Notodontidae) [PDF]

Ecology and Evolution, 2020
Herbivorous insects such as butterflies and moths are essential to natural and agricultural systems due to pollination and pest outbreaks. However, our knowledge of butterflies' and moths' nutrition is fragmented and limited to few common, charismatic ...
Juliano Morimoto, Zuzanna Pietras
doaj   +8 more sources

The Complete Mitochondrial Genome of Paeonia lactiflora Pall. (Saxifragales: Paeoniaceae): Evidence of Gene Transfer from Chloroplast to Mitochondrial Genome. [PDF]

Genes (Basel)
Paeonia lactiflora (P. lactiflora), a perennial plant renowned for its medicinal roots, provides a unique case for studying the phylogenetic relationships of species based on organelle genomes, as well as the transference of DNA across organelle genomes.
Tang P, Ni Y, Li J, Lu Q, Liu C, Guo J.
europepmc   +6 more sources