Results 171 to 180 of about 1,704,223 (314)

Exploring Secondary Structure Predictions for RNA-Targeted Drug Discovery: Power and Challenges. [PDF]

J Chem Inf Model
Zhang Z, Dolcetti G, Tyrchan C, De Maria L, Bussi G, Czechtizky W.   +5 more
europepmc   +1 more source

Aquaporin‐3 and aquaporin‐5 impact the development of pancreatic ductal adenocarcinoma spheroids

FEBS Open Bio, EarlyView.
Schematic representation of the role of aquaporin‐3 (AQP3) and aquaporin‐5 (AQP5) in pancreatic ductal adenocarcinoma (PDAC). Both proteins are upregulated in PDAC and are associated with tumor progression and metastatic potential. Silencing AQP3 or AQP5 in PDAC spheroids results in decreased diameter, area, and overall growth, underscoring their key ...
Catarina Pimpão, Diogo M. Engrácia, Graça Soveral, Filipa Mendes   +3 more
wiley   +1 more source

Machine learning for RNA secondary structure prediction: a review of current methods and challenges. [PDF]

RNA
Sacco G, Bussi G, Sanguinetti G.
europepmc   +1 more source

Molecular characterization of covRS mutations in M1UK Streptococcus pyogenes

FEBS Open Bio, EarlyView.
Group A Streptococcus (GAS) acquires covRS mutations driving a hypervirulent bacterial state, frequently associated with invasive disease‐like necrotizing fasciitis. We demonstrate that the newly emerged M1UK GAS lineage can also acquire these mutations.
Jarrad Pritchard, Emma‐Jayne Proctor, Jiawa Wang, Nikolas P. Johnston, Andrew Hayes, Georgia McCorkell, Haibo Yu, Jai Tree, Mark R. Davies, Mark J. Walker, Ronald Sluyter, Stephan Brouwer, Martina L. Sanderson‐Smith   +12 more
wiley   +1 more source

Fluctuating β-Sheet Secondary Structure in DS119 Explains the Small Effects of Backbone N-Amination on Thermal Stability. [PDF]

J Pept Sci
Qiao Y, Starnes SK, Dolenc J, Del Valle JR, Smith LJ.   +4 more
europepmc   +1 more source

Transcripts enriched in codons that trigger P‐site tRNA‐mediated mRNA decay possess stable mRNA

FEBS Open Bio, EarlyView.
PTMD codons were first described by Mendel et al. as mediators of an mRNA decay pathway dependent on the human protein CNOT3, homologous to yeast Not5. Our findings confirm that PTMD codons destabilize transcripts; however, unlike in yeast, the human pathway specifically targets and slightly destabilizes primarily stable mRNAs.
Rodolfo Lopes Carneiro, Fernando Lucas Palhano   +1 more
wiley   +1 more source

Secondary structure predictor

, 2015
In bioinformatics, secondary structure predictors are tools that are used to determine the secondary structure conformations of proteins based only on their amino acid sequence (primary structure).
Kong, Benjamin Xupeng
core  

SSE-TSR: An Approach to Integrate Secondary Structure Elements Into Triangular Spatial Relationships for Protein Classification. [PDF]

IEEE Trans Comput Biol Bioinform
Khajouie P, Sarkar T, Rauniyar K, Chen L, Xu W, Raghavan V.   +5 more
europepmc   +1 more source

Hyperosmotic stress‐induced redistribution of pre‐mRNA cleavage factor I subunits is associated with shifts in alternative polyadenylation

FEBS Open Bio, EarlyView.
Hyperosmotic stress triggers the relocation of the CFIm complex from the nucleus to the cytoplasm. This shift creates a nuclear ‘stoichiometric bottleneck’, limiting CFIm availability for mRNA processing. Consequently, specific mRNAs like NUDT21 and DICER1 undergo targeted 3′UTR shortening, demonstrating how spatial protein dynamics drive rapid ...
Hitomi Soumiya, Masatake Osawa, Hidefumi Fukumitsu   +2 more
wiley   +1 more source

THE SECONDARY STRUCTURE OF REOVIRUS RNA [PDF]

Proceedings of the National Academy of Sciences, 1963
P J, Gomatos, I, Tamm
openaire   +2 more sources