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Advances in protein-protein interaction prediction: a deep learning perspective. [PDF]

Front Bioinform
Alkhateeb N, Awad M.
europepmc   +1 more source

The EMBL-EBI search and sequence analysis tools APIs in 2019

Nucleic Acids Research, 2019
The EMBL-EBI provides free access to popular bioinformatics sequence analysis applications as well as to a full-featured text search engine with powerful cross-referencing and data retrieval capabilities.
Fabio Madeira, Young Mi Park, Nicola Buso   +2 more
exaly   +2 more sources

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Linear Sequence-to-Sequence Alignment

IEEE Transactions on Pattern Analysis and Machine Intelligence, 2004
In this paper, we consider the problem of estimating the spatiotemporal alignment between N unsynchronized video sequences of the same dynamic 3D scene, captured from distinct viewpoints. Unlike most existing methods, which work for N = 2 and rely on a computationally intensive search in the space of temporal alignments, we present a novel approach ...
Flávio L C, Pádua, Rodrigo L, Carceroni, Geraldo A M R, Santos, Kiriakos N, Kutulakos   +3 more
openaire   +2 more sources

Characteristic Sequences for DNA Primary Sequence

Journal of Chemical Information and Computer Sciences, 2002
A DNA sequence can be identified with a word over an alphabet N = [A, C, G, T]. Characteristic sequences of a DNA sequence are given in term of classifications of bases of nucleic acids. Using the characteristic sequences, we construct a set of 2 x 2 matrices to represent DNA primary sequences, which are based on counting of the frequency of occurrence
Ping-an, He, Jun, Wang
openaire   +2 more sources

Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

, 2013
Summary: BWA-MEM is a new alignment algorithm for aligning sequence reads or long query sequences against a large reference genome such as human. It automatically chooses between local and end-to-end alignments, supports paired-end reads and performs ...
Heng Li
semanticscholar   +1 more source

Spencer sequence and variational sequence

Acta Applicandae Mathematicae, 1995
The aim of this paper is to revisit the construction of the variational sequence existing within the formal calculus of variations in order to stabilize the order of jets involved and to establish a link with the dual of the Spencer sequence existing within the formal theory of systems of PDE.
openaire   +1 more source

Sequence assembly

Computational Biology and Chemistry, 2009
Despite the rapidly increasing number of sequenced and re-sequenced genomes, many issues regarding the computational assembly of large-scale sequencing data have remain unresolved. Computational assembly is crucial in large genome projects as well for the evolving high-throughput technologies and plays an important role in processing the information ...
Scheibye-Alsing, Karsten, Hoffmann, S., Frankel, Annett Maria, Jensen, Peter, Stadler, P.F., Mang, Yuan, Tommerup, Niels, Gilchrist, M.J., Hillig, Ann-Britt Nygaard, Cirera Salicio, Susanna, Jørgensen, Claus Bøttcher, Fredholm, Merete, Gorodkin, Jan   +12 more
openaire   +3 more sources

Sequencing or not sequencing

Applied Environmental Biotechnology, 2022
Technology has been playing a very important role in the advancement of science, and big breakthroughs in science are dependent upon technologies available from time to time. Between science and technology, a good understanding is required so that available technologies can be used most efficiently and effectively to solving the targeted questions in ...
openaire   +1 more source